Browse Element(s) Details


OsAffx.23331.4.S1_at

Description gb:NM_183772.1
DB_XREF= gi:34894671
GEN=B1153F04.28
TID=OsAffx.23331.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1153F04.28 (B1153F04.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g345241/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34450NANA12+20834350..20835503Auxin-binding protein 4 precursor, putative
LOC_Os12g34460Os.49793.1.S1_at11/1112+20835982..20837973Auxin-binding protein 4 precursor, putative, expressed
LOC_Os12g34470OsAffx.32018.1.S1_at11/1112+20840598..20841257hypothetical protein
LOC_Os12g34480OsAffx.32020.1.S1_s_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34480OsAffx.32020.2.S1_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34490OsAffx.32020.1.S1_s_at11/1112+20846109..20846582hypothetical protein
LOC_Os12g34500Os.48388.1.S1_at8/1112+20851271..20852959expressed protein
LOC_Os12g34510Os.4755.1.S1_at11/1112+20854827..20855670Histone H2A, putative, expressed
LOC_Os12g34524Os.51257.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_x_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524OsAffx.23331.4.S1_at1/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.6093.2.S2_at1/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34540NANA12+20884119..20885795retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23331.4.S1_at--459--9111NONE
TGCTGCTCAAGCTGCATCTAGAGAT
NONE
OsAffx.23331.4.S1_at--998--10012Chr01:12176816..12176837 (22 bp)
TAGAGATAGAAGCACCAACTTTCAG
NONE
OsAffx.23331.4.S1_at--646--5072Chr01:12176824..12176847 (24 bp)
GCACCAACTTTCAGCACTCAAAGGA
NONE
OsAffx.23331.4.S1_at--1079--5672Chr01:12177448..12177472 (25 bp)
GACATATTGAATCCCTTTGCTTTGA
NONE
OsAffx.23331.4.S1_at--935--5251Chr01:12177456..12177480 (25 bp)
GAATCCCTTTGCTTTGATCAAGTCG
NONE
OsAffx.23331.4.S1_at--1054--4292Chr01:12177461..12177485 (25 bp)
CCTTTGCTTTGATCAAGTCGTACAT
NONE
OsAffx.23331.4.S1_at--1147--3211Chr01:12177474..12177498 (25 bp)
CAAGTCGTACATTGGAAGGTTGCAT
NONE
OsAffx.23331.4.S1_at--725--711Chr01:12177517..12177541 (25 bp)
ATGATGATGCATGTTTCTAGGCCCA
NONE
OsAffx.23331.4.S1_at--562--6331Chr01:12177522..12177546 (25 bp)
GATGCATGTTTCTAGGCCCATGATA
NONE
OsAffx.23331.4.S1_at--998--8392Chr01:12177536..12177560 (25 bp)
GGCCCATGATAATTGGCTGTCAACA
NONE
OsAffx.23331.4.S1_at--1031--8832Chr01:12177542..12177566 (25 bp)
TGATAATTGGCTGTCAACAACTTTG
NONE
Target Sequence 
TGCTGCTCAAGCTGCATCTAGAGATAGAAGCACCAACTTTCAGCACTCAAAGGACATATTGAATCCCTTTGCTTTGATCA
AGTCGTACATTGGAAGGTTGCATGTTGTTGGTGTTTTTGTGATGATGATGCATGTTTCTAGGCCCATGATAATTGGCTGT
CAACAACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23331.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis