Browse Element(s) Details


Os.48388.1.S1_at

Description gb:AK059455.1
DB_XREF= gi:32969473
TID=Os.48388.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-C02, full insert sequence.
FL= gb:AK059455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g345008/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34440Os.34869.1.A1_at11/1112+20827619..20829539expressed protein
LOC_Os12g34450NANA12+20834350..20835503Auxin-binding protein 4 precursor, putative
LOC_Os12g34460Os.49793.1.S1_at11/1112+20835982..20837973Auxin-binding protein 4 precursor, putative, expressed
LOC_Os12g34470OsAffx.32018.1.S1_at11/1112+20840598..20841257hypothetical protein
LOC_Os12g34480OsAffx.32020.1.S1_s_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34480OsAffx.32020.2.S1_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34490OsAffx.32020.1.S1_s_at11/1112+20846109..20846582hypothetical protein
LOC_Os12g34500Os.48388.1.S1_at8/1112+20851271..20852959expressed protein
LOC_Os12g34510Os.4755.1.S1_at11/1112+20854827..20855670Histone H2A, putative, expressed
LOC_Os12g34524Os.51257.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_x_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524OsAffx.23331.4.S1_at1/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.6093.2.S2_at1/1112+20856662..20866142Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48388.1.S1_at--598--771Chr12:20852444..20852468 (25 bp)
ATGTCGCAGCTCCAAGCATCCTGTG
LOC_Os12g34500
Os.48388.1.S1_at--211--4991NONE
GCATCCTGTGATGAGCTCGATACAA
NONE
Os.48388.1.S1_at--1062--2351Chr12:20852483..20852506 (24 bp)
AAAGCGCTCGCTCCTGAATGATGAG
LOC_Os12g34500
Os.48388.1.S1_at--759--1651Chr12:20852484..20852572 (25 bp)
AGCGCGCAAGCTGAAGTCGAAAATT
LOC_Os12g34500
Os.48388.1.S1_at--902--5671NONE
GACATTGAGCTGCTGAATCTCGAAG
NONE
Os.48388.1.S1_at--722--5251Chr12:20852686..20852710 (25 bp)
GAATCTCGAAGTGGCTGAGGCACAT
LOC_Os12g34500
Os.48388.1.S1_at--487--4951NONE
GCATTTGGGCTTGGCTCTATGCGGC
NONE
Os.48388.1.S1_at--1145--10111Chr12:20852786..20852810 (25 bp)
TATGCCACCAAGTCCCGGTGAAGGA
LOC_Os12g34500
Os.48388.1.S1_at--517--8131Chr12:20852808..20852832 (25 bp)
GGACTTACACTTTTCTTTTTGCTAT
LOC_Os12g34500
Os.48388.1.S1_at--692--6671Chr12:20852883..20852907 (25 bp)
GTTGCTATCTCGCTGAATTACTCTA
LOC_Os12g34500
Os.48388.1.S1_at--1144--11Chr12:20852916..20852940 (25 bp)
ATTGGCTGCCACTATGCAATGAAGT
LOC_Os12g34500
Target Sequence 
ATGTCGCAGCTCCAAGCATCCTGTGATGAGCTCGATACAAAGCGCTCGCTCCTGAATGATGAGAAGAATTATGTTCAGGA
GGCACTGGATGCTGAGAAGGCTGAAGCGCGCAAGCTGAAGTCGAAAATTGAGGCTCTTGAGAACTGCAATGTTGAGAAGG
ACAGTGAGATTGGGAAGCTGAAGTTGGCACTGATGGAAAAGAGGGAGAAGATTGATGTCCTAATCAAGGACATTGAGCTG
CTGAATCTCGAAGTGGCTGAGGCACATAGGAAGAGGAAGGGTGGCATTTGGGCTTGGCTCTATGCGGCNACGACTACCAT
GGTGGCTGCCATCTCCTTCATCTATGCCACCAAGTCCCGGTGAAGGACTTACACTTTTCTTTTTGCTATGTTCNNGTTTN
CTGTTTACATNNNTATCAGTATGCAACTCGATATGATAAGGTTGCTATCTCGCTGAATTACTCTATGATGGTGATTGGCT
GCCACTATGCAATGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis