Browse Element(s) Details


OsAffx.32020.1.S1_s_at

Description tigr:9640.m03331
TID=OsAffx.32020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3449011/11hypothetical protein
LOC_Os12g3448011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34410OsAffx.32017.1.S1_x_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34419NANA12+20822908..20823369hypothetical protein
LOC_Os12g34430NANA12+20824734..20825060expressed protein
LOC_Os12g34440Os.34869.1.A1_at11/1112+20827619..20829539expressed protein
LOC_Os12g34450NANA12+20834350..20835503Auxin-binding protein 4 precursor, putative
LOC_Os12g34460Os.49793.1.S1_at11/1112+20835982..20837973Auxin-binding protein 4 precursor, putative, expressed
LOC_Os12g34470OsAffx.32018.1.S1_at11/1112+20840598..20841257hypothetical protein
LOC_Os12g34480OsAffx.32020.1.S1_s_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34480OsAffx.32020.2.S1_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34490OsAffx.32020.1.S1_s_at11/1112+20846109..20846582hypothetical protein
LOC_Os12g34500Os.48388.1.S1_at8/1112+20851271..20852959expressed protein
LOC_Os12g34510Os.4755.1.S1_at11/1112+20854827..20855670Histone H2A, putative, expressed
LOC_Os12g34524Os.51257.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_x_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524OsAffx.23331.4.S1_at1/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.6093.2.S2_at1/1112+20856662..20866142Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32020.1.S1_s_at--540--832Chr12:20846510..20846534 (25 bp)
ATGGATATCTTACCGCATGAGGTCT
LOC_Os12g34490
OsAffx.32020.1.S1_s_at--876--10152Chr12:20846505..20846529 (25 bp)
TATCTTACCGCATGAGGTCTCAGAG
LOC_Os12g34490
OsAffx.32020.1.S1_s_at--696--7812Chr12:20846490..20846514 (25 bp)
GGTCTCAGAGCCAGAGTCAAATCTT
LOC_Os12g34490
OsAffx.32020.1.S1_s_at--167--5872Chr12:20846483..20846507 (25 bp)
GAGCCAGAGTCAAATCTTCTAGATA
LOC_Os12g34490
OsAffx.32020.1.S1_s_at--734--6612Chr12:20846442..20846466 (25 bp)
GTTGGCAAAGGAGTCACGACCGCCT
LOC_Os12g34490
OsAffx.32020.1.S1_s_at--247--2312Chr12:20846436..20846460 (25 bp)
AAAGGAGTCACGACCGCCTCTACCA
LOC_Os12g34490
OsAffx.32020.1.S1_s_at--94--9992Chr12:20846416..20846440 (25 bp)
TACCACCAGCAATGCCATGGAGAGG
LOC_Os12g34490
OsAffx.32020.1.S1_s_at--379--752Chr12:20846351..20846375 (25 bp)
ATGTCACAGGTACCCACAAAGCTAC
LOC_Os12g34490
OsAffx.32020.1.S1_s_at--744--9472Chr12:20846319..20846343 (25 bp)
TCTCCATGCATCTCGCGTGGATGGG
LOC_Os12g34490
OsAffx.32020.1.S1_s_at--818--2412Chr12:20846227..20846251 (25 bp)
AAAAAGATGTCGAGGATCATGCAAA
LOC_Os12g34490
OsAffx.32020.1.S1_s_at--305--3992Chr12:20846217..20846241 (25 bp)
CGAGGATCATGCAAAGGGTAACCAT
LOC_Os12g34490
Target Sequence 
ATGGATATCTTACCGCATGAGGTCTCAGAGCCAGAGTCAAATCTTCTAGATATAAATGAGAAGAGAAGGTTGGCAAAGGA
GTCACGACCGCCTCTACCACCAGCAATGCCATGGAGAGGGAAGCGCATAGTCTTAGACCGCTATGATGGGCGACTGATAA
TGTCACAGGTACCCACAAAGCTACCCTTCACTCTCCATGCATCTCGCGTGGATGGGCGGCTTAGATTGTCTTGTATGCAC
CCATCTGATAGTGTTGATGAGCTTAAAGTAGCTAGCAATGGCAAAAAAGATGTCGAGGATCATGCAAAGGGTAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32020.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis