Browse Element(s) Details


OsAffx.32017.1.S1_at

Description tigr:9640.m03323
TID=OsAffx.32017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3441011/11hypothetical protein
LOC_Os09g010061/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34360NANA12+20795523..20798205expressed protein
LOC_Os12g34370Os.17717.1.S1_at10/1112+20799457..20804469Adaptor complexes medium subunit family protein, expressed
LOC_Os12g34380Os.12023.1.S1_at5/1112+20805121..20809489Glutathione synthetase, chloroplast precursor, putative, expressed
LOC_Os12g34390OsAffx.32016.1.S1_at11/1112+20814521..20816387hypothetical protein
LOC_Os12g34400OsAffx.19965.1.S1_at11/1112+20816565..20817807hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_x_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34419NANA12+20822908..20823369hypothetical protein
LOC_Os12g34430NANA12+20824734..20825060expressed protein
LOC_Os12g34440Os.34869.1.A1_at11/1112+20827619..20829539expressed protein
LOC_Os12g34450NANA12+20834350..20835503Auxin-binding protein 4 precursor, putative
LOC_Os12g34460Os.49793.1.S1_at11/1112+20835982..20837973Auxin-binding protein 4 precursor, putative, expressed
LOC_Os12g34470OsAffx.32018.1.S1_at11/1112+20840598..20841257hypothetical protein
LOC_Os12g34480OsAffx.32020.1.S1_s_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34480OsAffx.32020.2.S1_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34490OsAffx.32020.1.S1_s_at11/1112+20846109..20846582hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32017.1.S1_at--109--7252Chr12:20820835..20820889 (25 bp)
GTCCCACGATCACCTCTCTTTGTGA
LOC_Os12g34410
OsAffx.32017.1.S1_at--342--6451Chr12:20820842..20820896 (25 bp)
GATCACCTCTCTTTGTGACCTCGGA
LOC_Os12g34410
OsAffx.32017.1.S1_at--658--1751Chr12:20820880..20820900 (21 bp)
ACCTCTCTTTGTGACCTCGGAGCAA
LOC_Os12g34410
OsAffx.32017.1.S1_at--1106--3751Chr12:20820880..20820904 (25 bp)
CTCTTTGTGACCTCGGAGCAAGCAT
LOC_Os12g34410
OsAffx.32017.1.S1_at--579--10251Chr12:20820883..20820907 (25 bp)
TTTGTGACCTCGGAGCAAGCATAAG
LOC_Os12g34410
OsAffx.32017.1.S1_at--836--351Chr12:20820903..20820927 (25 bp)
ATAAGCGTCATTCCTAAAGACGTCT
LOC_Os12g34410
OsAffx.32017.1.S1_at--933--8691Chr12:20821022..20821046 (25 bp)
TGTGCCGGTAAAGATTTGGGATTTC
LOC_Os12g34410
OsAffx.32017.1.S1_at--980--3511Chr12:20821076..20821100 (25 bp)
CATGAACACAGAGAAGGAGACGCCG
LOC_Os12g34410
OsAffx.32017.1.S1_at--751--3191Chr12:20821221..20821245 (25 bp)
CAATGCTCCATGGTCTGGATCAATA
LOC_Os12g34410
OsAffx.32017.1.S1_at--322--9091Chr12:20821224..20821248 (25 bp)
TGCTCCATGGTCTGGATCAATACGG
LOC_Os12g34410
OsAffx.32017.1.S1_at--355--3491Chr12:20821229..20821253 (25 bp)
CATGGTCTGGATCAATACGGGCCAA
LOC_Os12g34410
Target Sequence 
GTCCCACGATCACCTCTCTTTGTGACCTCGGAGCAAGCATAAGCGTCATTCCTAAAGACGTCTTCGACAAGCTCAACTTC
ACGGTGTTGACACCAACACCGATGCGCCTGCAATTGGCTGACTCATCGGTCCGTTACCCAGCTAGGATAGCGGAGGATGT
GCCGGTAAAGATTTGGGATTTCTTCATCCCGGTTGACTTTGTGGTGCTGGACATGAACACAGAGAAGGAGACGCCGCTCA
TTCTGGGGCGTCCGTTCCTTAGCACCGCGGAAGCCAACATTGATGTGGGAATGGGGAGCATCCGTTTCCATATCAACGGG
AAAGAAGAGAAGTTCGAGTTCCAGCCGAGGACCGAACAATGCTCCATGGTCTGGATCAATACGGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis