Browse Element(s) Details


Os.12023.1.S1_at

Description gb:AK103004.1
DB_XREF= gi:32988213
TID=Os.12023.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116H11, full insert sequence.
FL= gb:AK058922.1 gb:AK103004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g343805/11Glutathione synthetase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34340Os.16910.1.S1_at10/1112+20780843..20782892pentatricopeptide, putative, expressed
LOC_Os12g34350Os.11418.1.S1_at11/1112+20782970..20787310expressed protein
LOC_Os12g34360NANA12+20795523..20798205expressed protein
LOC_Os12g34370Os.17717.1.S1_at10/1112+20799457..20804469Adaptor complexes medium subunit family protein, expressed
LOC_Os12g34380Os.12023.1.S1_at5/1112+20805121..20809489Glutathione synthetase, chloroplast precursor, putative, expressed
LOC_Os12g34390OsAffx.32016.1.S1_at11/1112+20814521..20816387hypothetical protein
LOC_Os12g34400OsAffx.19965.1.S1_at11/1112+20816565..20817807hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_x_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34419NANA12+20822908..20823369hypothetical protein
LOC_Os12g34430NANA12+20824734..20825060expressed protein
LOC_Os12g34440Os.34869.1.A1_at11/1112+20827619..20829539expressed protein
LOC_Os12g34450NANA12+20834350..20835503Auxin-binding protein 4 precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006750biological_processglutathione biosynthesis
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004363molecular_functionglutathione synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12023.1.S1_at--710--6011Chr12:20809100..20809124 (25 bp)
GAGAGACTTTGATCAGACTCCAGAA
LOC_Os12g34380
Os.12023.1.S1_at--790--9511Chr12:20809183..20809207 (25 bp)
TCTCTCTCTAATCTGGTTCGTGGTG
LOC_Os12g34380
Os.12023.1.S1_at--795--671Chr12:20809217..20809241 (25 bp)
ATGAGGCCCTCACAATATCTGAGCT
LOC_Os12g34380
Os.12023.1.S1_at--291--3131Chr12:20809245..20809266 (22 bp)
AATTTATGGTGCTTACTTGCGGAAC
LOC_Os12g34380
Os.12023.1.S1_at--342--8731Chr12:20809464..20809488 (25 bp)
TGTACTTAACCGACAAGGCGATGTA
LOC_Os12g34380
Os.12023.1.S1_at--183--10391Chr12:20809506..20809530 (25 bp)
TTTTCTCAGATTTAGCCTGCTCATT
NONE
Os.12023.1.S1_at--1073--10091Chr12:20809613..20809637 (25 bp)
TAGGCTTATAGCTTCTCATCTGATT
NONE
Os.12023.1.S1_at--256--9611Chr12:20809628..20809652 (25 bp)
TCATCTGATTATTTCCTTGGGACGT
NONE
Os.12023.1.S1_at--11--9751Chr12:20809658..20809682 (25 bp)
TAATTATCCCTATTTATGCTCCCGA
NONE
Os.12023.1.S1_at--757--611Chr12:20809673..20809697 (25 bp)
ATGCTCCCGATATGTAATTTTGTAC
NONE
Os.12023.1.S1_at--333--7491Chr12:20809704..20809728 (25 bp)
GTGGTGTCTTCAGTTGGCAGTTTAC
NONE
Target Sequence 
GAGAGACTTTGATCAGACTCCAGAAGGAAGGAGGGGATGCGCTTGCAGCCTACATACTGATGCAAAGAATCTTCCCAAAA
GCCTCTCTCTCTAATCTGGTTCGTGGTGGTGTTTGCCATGAGGCCCTCACAATATCTGAGCTTGGAATTTATGGTGCTTA
CTTGCGGAACAATGATAAGGTGGTTATGAATGAACAGAGTGGTTACTTGATGCGGACAAAAGTTTCATCGTCAGATGAAG
GTGGCGTTGCTGCAGGATTTGCTGTTTTGGATAGTTTGTACTTAACCGACAAGGCGATGTAGACATGATTGTTGAACANT
TTTCTCAGATTTAGCCTGCTCATTTNTGATGGACAGCAAATTCCAAAACAAGAACACATTGTATCGTGTTTCAAGTGTAC
TATATGCTTGAAGCTGAGGAGCATTATAGGCTTATAGCTTCTCATCTGATTATTTCCTTGGGACGTTATGATAATTATCC
CTATTTATGCTCCCGATATGTAATTTTGTACTACAAGGTGGTGTCTTCAGTTGGCAGTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis