Browse Element(s) Details


Os.46534.2.S1_x_at

Description gb:NM_196109.1
DB_XREF= gi:37533577
TID=Os.46534.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46534 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (OJ1003C07.2), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2251011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22484Os.7185.1.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22484Os.7185.2.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22510Os.46534.1.S1_at11/1110+11331217..11335217expressed protein
LOC_Os10g22510Os.46534.2.S1_x_at11/1110+11331217..11335217expressed protein
LOC_Os10g22520Os.7314.1.S1_at11/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.20993.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520Os.51832.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.9431.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22540NANA10+11347200..11350424retrotransposon protein, putative, unclassified
LOC_Os10g22550NANA10+11351044..11356798retrotransposon protein, putative, unclassified
LOC_Os10g22560Os.46546.2.S1_x_at11/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22560Os.46546.1.S1_at10/1110+11359758..11363655POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46534.2.S1_x_at--152--7911Chr10:11334245..11334269 (25 bp)
GGTTCGTGATCGAACGCGGCGATCT
LOC_Os10g22510
Os.46534.2.S1_x_at--314--9031Chr10:11334287..11334311 (25 bp)
TGCACATCGTGGTGGTGTCCATGAC
LOC_Os10g22510
Os.46534.2.S1_x_at--1014--7731Chr10:11334300..11334324 (25 bp)
GGTGTCCATGACGACGATGAGCAAG
LOC_Os10g22510
Os.46534.2.S1_x_at--760--1671Chr10:11334329..11334353 (25 bp)
AGCCAGAGATCCAGGAGGGAGCCCT
LOC_Os10g22510
Os.46534.2.S1_x_at--695--5871Chr10:11334347..11334371 (25 bp)
GAGCCCTGCCGAATCTGGAGTCGTT
LOC_Os10g22510
Os.46534.2.S1_x_at--944--1131Chr10:11334365..11334389 (25 bp)
AGTCGTTCCATCTCCTCTGCAAGGA
LOC_Os10g22510
Os.46534.2.S1_x_at--902--9011Chr10:11334382..11334406 (25 bp)
TGCAAGGATCTGGATGGCCCCTGCG
LOC_Os10g22510
Os.46534.2.S1_x_at--1019--8431Chr10:11334406..11334430 (25 bp)
GGCCATGGAGGCATCAGGATCGACT
LOC_Os10g22510
Os.46534.2.S1_x_at--307--7291Chr10:11334444..11334468 (25 bp)
GTGCCTCAGGGAGATTGTTCTTGAC
LOC_Os10g22510
Os.46534.2.S1_x_at--224--1071Chr10:11334688..11334712 (25 bp)
AGGGAGGAATCCGATATCTCCGCCG
LOC_Os10g22510
Os.46534.2.S1_x_at--1054--4771Chr10:11334754..11334778 (25 bp)
GCTGCGAGCATCCACCAGAGTAGTG
LOC_Os10g22510
Target Sequence 
GGTTCGTGATCGAACGCGGCGATCTGCAGAGCCTGCGACGCCTGCACATCGTGGTGGTGTCCATGACGACGATGAGCAAG
CAGCAGCCAGAGATCCAGGAGGGAGCCCTGCCGAATCTGGAGTCGTTCCATCTCCTCTGCAAGGATCTGGATGGCCCCTG
CGGCCATGGAGGCATCAGGATCGACTCCCTCGGGCTCGGGTGCCTCAGGGAGATTGTTCTTGACGACGGAGTTCGTGAGA
CGGCGAAGGAGCAGTGGAAGGACGCGGCGAGGCGGCACCCGAAGCGGCCCAAGGTGGTGTTCGTCGGAGCGGGAGACGTC
GTCGATCGGCGGCGGGTGGGTGCTGCTGCTGCTGCCGCGCCTGCAGCAGGAGAGAGCAATTCTGCGATGGCACCGGCGGC
GGTGGCTTCGGTGGTGGCCGCCGGCGACGTCAAGAGGCCGGCTAGGGAGGAATCCGATATCTCCGCCGCGCTGGCGAGCC
TTCCGGCGAAGATGGCGAGGCTGCTCGGCGCTGCGAGCATCCACCAGAGTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46534.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis