Browse Element(s) Details


OsAffx.9431.1.S1_at

Description gb:NM_191288.1
DB_XREF= gi:34909659
GEN=OJ1414_E05.7
TID=OsAffx.9431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1414_E05.7 (OJ1414_E05.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g225201/11Cellulase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22484Os.7185.1.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22484Os.7185.2.S1_a_at11/1110+11318289..11327942NB-ARC domain containing protein, expressed
LOC_Os10g22510Os.46534.1.S1_at11/1110+11331217..11335217expressed protein
LOC_Os10g22510Os.46534.2.S1_x_at11/1110+11331217..11335217expressed protein
LOC_Os10g22520Os.7314.1.S1_at11/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.20993.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520Os.51832.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22520OsAffx.9431.1.S1_at1/1110+11335395..11342215Cellulase containing protein, expressed
LOC_Os10g22540NANA10+11347200..11350424retrotransposon protein, putative, unclassified
LOC_Os10g22550NANA10+11351044..11356798retrotransposon protein, putative, unclassified
LOC_Os10g22560Os.46546.2.S1_x_at11/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22560Os.46546.1.S1_at10/1110+11359758..11363655POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9431.1.S1_at--1160--10311Chr01:32083439..32083463 (25 bp)
TTTACCGTGCACCATCGATCACAAC
NONE
OsAffx.9431.1.S1_at--215--6451Chr01:32083423..32083447 (25 bp)
GATCACAACAAACCTGCAGACCTTT
NONE
OsAffx.9431.1.S1_at--134--9051Chr01:32083409..32083433 (25 bp)
TGCAGACCTTTGCATGCTAGCTTTG
NONE
OsAffx.9431.1.S1_at--672--7531Chr01:32082655..32082679 (25 bp)
GTGGCTCGCAGCCAATCCGGAATTC
NONE
OsAffx.9431.1.S1_at--235--3031Chr01:32082642..32082666 (25 bp)
AATCCGGAATTCCAGCGCCCAGGTG
NONE
OsAffx.9431.1.S1_at--625--1811Chr01:32082616..32082640 (25 bp)
ACGCGAAGGCCGGAACGCCAGTACG
NONE
OsAffx.9431.1.S1_at--637--4131Chr01:32082588..32082612 (25 bp)
CGCTCATCGTGCTAGAGTCATCTGA
NONE
OsAffx.9431.1.S1_at--823--8571Chr01:32082563..32082587 (25 bp)
TGGTATCATGGAAGAGCGAGCAGAC
NONE
OsAffx.9431.1.S1_at--930--4111Chr01:32082495..32082519 (25 bp)
CGCAGATTATGTGCGGCTCCGCATG
NONE
OsAffx.9431.1.S1_at--675--4551Chr01:32082471..32082495 (25 bp)
GCCCAGAGCGCAACGGAGGAGCAAT
NONE
OsAffx.9431.1.S1_at--400--1933Chr09:9351652..9352035 (25 bp)
ACGGAGGAGCAATTCTACGGTTCTT
NONE
Target Sequence 
TTTACCGTGCACCATCGATCACAACAAACCTGCAGACCTTTGCATGCTAGCTTTGCCCGTGGCTCGCAGCCAATCCGGAA
TTCCAGCGCCCAGGTGCACGCGAAGGCCGGAACGCCAGTACGCCACGCTCATCGTGCTAGAGTCATCTGATGGTATCATG
GAAGAGCGAGCAGACGGGAAGTTGTGGATGTGGGAGAGCCCGTCCGCGGCCAACTTGCCGCAGATTATGTGCGGCTCCGC
ATGCCCAGAGCGCAACGGAGGAGCAATTCTACGGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis