Browse Element(s) Details


OsAffx.30500.1.S1_at

Description tigr:9638.m01908
TID=OsAffx.30500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2258011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22560Os.46546.2.S1_x_at11/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22560Os.46546.1.S1_at10/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22570Os.26719.1.S1_at11/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22570Os.52165.1.S1_at1/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22580OsAffx.30500.1.S1_at11/1110+11385169..11386483hypothetical protein
LOC_Os10g22580Os.57008.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22580OsAffx.32015.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22590Os.5297.1.S1_at11/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22590Os.3577.1.S1_x_at2/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22600OsAffx.20436.1.S1_x_at11/1110+11400208..11401173AP2 domain containing protein, expressed
LOC_Os10g22610Os.4183.1.S1_a_at1/1110+11411238..11411871hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30500.1.S1_at--770--9351Chr10:11386401..11386425 (25 bp)
TCGAAAGAGGCTACCTGACGCAGCT
LOC_Os10g22580
OsAffx.30500.1.S1_at--723--2791Chr10:11386397..11386421 (25 bp)
AAGAGGCTACCTGACGCAGCTCTAC
LOC_Os10g22580
OsAffx.30500.1.S1_at--770--9191Chr10:11386353..11386377 (25 bp)
TGCCTAGCCGCGTCGGCTGCAGAGA
LOC_Os10g22580
OsAffx.30500.1.S1_at--1059--4011Chr10:11386343..11386367 (25 bp)
CGTCGGCTGCAGAGAAGGCCCACAA
LOC_Os10g22580
OsAffx.30500.1.S1_at--1138--3511Chr10:11386312..11386336 (25 bp)
CATGATGCCACCTTCACCAAGCGAT
LOC_Os10g22580
OsAffx.30500.1.S1_at--259--3371Chr10:11386304..11386328 (25 bp)
CACCTTCACCAAGCGATCGATTGGA
LOC_Os10g22580
OsAffx.30500.1.S1_at--504--4411Chr10:11385304..11385328 (25 bp)
GCCACGACTAACGAAAGAGGAGCTG
LOC_Os10g22580
OsAffx.30500.1.S1_at--266--6211Chr10:11385273..11385297 (25 bp)
GAGGCCGAGGCAACAACGACCTTGT
LOC_Os10g22580
OsAffx.30500.1.S1_at--857--2592Chr01:38121220..38121240 (21 bp)
AACGACCTTGTTAGTGGGAGAGCTG
NONE
OsAffx.30500.1.S1_at--1083--10051Chr10:11385248..11385272 (25 bp)
TAGTGGGAGAGCTGTGGCCCGACCC
LOC_Os10g22580
OsAffx.30500.1.S1_at--77--4311Chr10:11385201..11385225 (25 bp)
CCTAGGGATGGTTGTGTTGAAGAAA
LOC_Os10g22580
Target Sequence 
TCGAAAGAGGCTACCTGACGCAGCTCTACCCCTCCTGCTCCACATTCCTGCCTAGCCGCGTCGGCTGCAGAGAAGGCCCA
CAACCGCTCCATGATGCCACCTTCACCAAGCGATCGATTGGAAAGGGGGAGAGGAAGCCGGCTGGAGTAGGGGGACATGA
GGGGCCACGACTAACGAAAGAGGAGCTGGATCCAGAGGCCGAGGCAACAACGACCTTGTTAGTGGGAGAGCTGTGGCCCG
ACCCGGGGGATAGTAGCCAGGCGGAGCCTAGGGATGGTTGTGTTGAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis