Browse Element(s) Details


OsAffx.20436.1.S1_x_at

Description tigr:9638.m01910
TID=OsAffx.20436.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2260011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22570Os.26719.1.S1_at11/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22570Os.52165.1.S1_at1/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22580OsAffx.30500.1.S1_at11/1110+11385169..11386483hypothetical protein
LOC_Os10g22580Os.57008.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22580OsAffx.32015.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22590Os.5297.1.S1_at11/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22590Os.3577.1.S1_x_at2/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22600OsAffx.20436.1.S1_x_at11/1110+11400208..11401173AP2 domain containing protein, expressed
LOC_Os10g22610Os.4183.1.S1_a_at1/1110+11411238..11411871hypothetical protein
LOC_Os10g22620OsAffx.31869.4.S1_x_at11/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.4.S1_at11/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.3.S1_s_at4/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.3.S1_x_at4/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.5.S1_x_at3/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620Os.48015.1.A1_at1/1110+11415726..11417070retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20436.1.S1_x_at--657--5811Chr10:11400799..11400823 (25 bp)
GACGCCAAGATCCTCCAAGCCACCA
LOC_Os10g22600
OsAffx.20436.1.S1_x_at--266--4151Chr10:11400895..11400919 (25 bp)
CGCGTCGTCAAGACCGAGCCGGGCT
LOC_Os10g22600
OsAffx.20436.1.S1_x_at--914--9391Chr10:11400899..11400923 (25 bp)
TCGTCAAGACCGAGCCGGGCTGCTG
LOC_Os10g22600
OsAffx.20436.1.S1_x_at--491--4511Chr10:11400964..11400988 (25 bp)
GCCGACGTCTCGTCCACAGGGTCTT
LOC_Os10g22600
OsAffx.20436.1.S1_x_at--160--4231Chr10:11400997..11401021 (25 bp)
CCGACCTCATCGAATCAGGCCGCCA
LOC_Os10g22600
OsAffx.20436.1.S1_x_at--960--4031Chr10:11401055..11401079 (25 bp)
CGTTGCCGGAGACGATTCAGCAGCT
LOC_Os10g22600
OsAffx.20436.1.S1_x_at--1065--4251Chr10:11401060..11401084 (25 bp)
CCGGAGACGATTCAGCAGCTGGACT
LOC_Os10g22600
OsAffx.20436.1.S1_x_at--327--8051Chr10:11401062..11401086 (25 bp)
GGAGACGATTCAGCAGCTGGACTTC
LOC_Os10g22600
OsAffx.20436.1.S1_x_at--209--6571Chr10:11401068..11401092 (25 bp)
GATTCAGCAGCTGGACTTCACGGAG
LOC_Os10g22600
OsAffx.20436.1.S1_x_at--9--10531Chr10:11401070..11401094 (25 bp)
TTCAGCAGCTGGACTTCACGGAGGC
LOC_Os10g22600
OsAffx.20436.1.S1_x_at--299--5751Chr10:11401111..11401135 (25 bp)
GACGGCTTCGCGCTGCGCCGGTATC
LOC_Os10g22600
Target Sequence 
GACGCCAAGATCCTCCAAGCCACCACCACCACCACGGCGGACACCGCCGCCGCCGCAGCACCGGCGTCGACGAACACCAC
GCCGCCGCCGTCGCCGCGCGTCGTCAAGACCGAGCCGGGCTGCTGCTCCGTCTCCGAAGCCTCCACGACGACGACGGCCG
ACGCCGCCGACGTCTCGTCCACAGGGTCTTCCCCATCCCCGACCTCATCGAATCAGGCCGCCACCGCCACGCCGCCGGCG
CCGCGGCCGCCGCCGCCGTTGCCGGAGACGATTCAGCAGCTGGACTTCACGGAGGCGCCATGGGACGAGGCCGACGGCTT
CGCGCTGCGCCGGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20436.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis