Browse Element(s) Details


OsAffx.18344.1.S1_at

Description gb:NM_196087.1
DB_XREF= gi:37533533
TID=OsAffx.18344.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0083M08.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2227011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22220OsAffx.15648.1.S1_at1/1110+11163371..11166699Zinc knuckle family protein
LOC_Os10g22230NANA10+11174458..11175845Zinc knuckle family protein
LOC_Os10g22240NANA10+11178521..11181474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22250OsAffx.22722.1.S1_x_at1/1110+11181967..11184492retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.1.S1_at11/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.1.S1_x_at11/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.2.S1_x_at3/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22270OsAffx.18344.1.S1_at11/1110+11191642..11191958hypothetical protein
LOC_Os10g22290OsAffx.30497.1.S1_at10/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.5.S1_x_at5/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.2.A1_at2/1110+11194428..11196644hypothetical protein
LOC_Os10g22300OsAffx.20439.1.S1_at11/1110+11197659..11204011NB-ARC domain containing protein, expressed
LOC_Os10g22310Os.46885.2.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.2.S1_at10/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22320NANA10+11208808..11209218hypothetical protein
LOC_Os10g22330Os.7061.1.S1_at10/1110+11211712..11214648Adapter-related protein complex 4 sigma 1 subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18344.1.S1_at--1053--5891Chr10:11191901..11191925 (25 bp)
GAGCTCCTCTTGAATCTCATTGGAA
LOC_Os10g22270
OsAffx.18344.1.S1_at--650--5251Chr10:11191890..11191914 (25 bp)
GAATCTCATTGGAAACATGGATGAC
LOC_Os10g22270
OsAffx.18344.1.S1_at--747--6351Chr10:11191853..11191877 (25 bp)
GATGCCCATGTCTTCAACTTTCGGT
LOC_Os10g22270
OsAffx.18344.1.S1_at--369--9712Chr03:12350760..12350779 (20 bp)
TCAACTTTCGGTTCCTCTTTCGTCT
NONE
OsAffx.18344.1.S1_at--1034--9431Chr10:11191833..11191857 (25 bp)
TCGGTTCCTCTTTCGTCTGGCCAGA
LOC_Os10g22270
OsAffx.18344.1.S1_at--488--9111Chr10:11191795..11191819 (25 bp)
TGCTGCTCCCTTCTATTGGCTGGTA
LOC_Os10g22270
OsAffx.18344.1.S1_at--910--10231Chr10:11191782..11191806 (25 bp)
TATTGGCTGGTATGCTTCCAGGCCA
LOC_Os10g22270
OsAffx.18344.1.S1_at--1097--10671Chr10:11191767..11191791 (25 bp)
TTCCAGGCCATGGTCGTGGAGTCTT
LOC_Os10g22270
OsAffx.18344.1.S1_at--980--9271Chr10:11191718..11191742 (25 bp)
TCCGTGAAGATGGTCCAACTTGTTT
LOC_Os10g22270
OsAffx.18344.1.S1_at--1088--3251Chr10:11191703..11191727 (25 bp)
CAACTTGTTTGTGGTCAAGGCTCTT
LOC_Os10g22270
OsAffx.18344.1.S1_at--846--8651Chr10:11191694..11191718 (25 bp)
TGTGGTCAAGGCTCTTTGGCCTCAC
LOC_Os10g22270
Target Sequence 
GAGCTCCTCTTGAATCTCATTGGAAACATGGATGACACCGATGTCTCTGATGCCCATGTCTTCAACTTTCGGTTCCTCTT
TCGTCTGGCCAGACCCCCTTTCTTGATGCTGCTCCCTTCTATTGGCTGGTATGCTTCCAGGCCATGGTCGTGGAGTCTTT
CGGTGGATGAGGAGAAGTGTTCGTCCGTGAAGATGGTCCAACTTGTTTGTGGTCAAGGCTCTTTGGCCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis