Browse Element(s) Details


OsAffx.18763.1.S1_at

Description tigr:9639.m00894
TID=OsAffx.18763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0951011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09460Os.27333.2.S1_x_at11/1111+5068519..5070176expressed protein
LOC_Os11g09460Os.27333.3.S1_at11/1111+5068519..5070176expressed protein
LOC_Os11g09470Os.27333.1.S1_at7/1111+5071641..5072196hypothetical protein
LOC_Os11g09480NANA11+5075544..5077911F-box domain containing protein, expressed
LOC_Os11g09490Os.54744.1.S1_at3/1111+5081529..5083880F-box domain containing protein
LOC_Os11g09500NANA11+5086336..5088670F-box domain containing protein
LOC_Os11g09510OsAffx.18763.1.S1_at11/1111+5092787..5095348F-box domain containing protein
LOC_Os11g09520NANA11+5099306..5100973retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09530OsAffx.30900.1.S1_at1/1111+5102435..5104871retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09530Os.46601.1.S1_at1/1111+5102435..5104871retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09540OsAffx.30900.1.S1_at11/1111+5106065..5106358hypothetical protein
LOC_Os11g09550NANA11+5107047..5108968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09560NANA11+5116547..5116843hypothetical protein
LOC_Os11g09570OsAffx.18765.1.S1_at11/1111+5117672..5118758hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18763.1.S1_at--1022--511Chr11:5094746..5094770 (25 bp)
ATCGCTTCTGGATCTGATCTTGCAC
LOC_Os11g09510
OsAffx.18763.1.S1_at--1122--4071Chr11:5094710..5094734 (25 bp)
CGACGCTGTGCAGATGTCATCTCAA
LOC_Os11g09510
OsAffx.18763.1.S1_at--106--7131Chr11:5094695..5094719 (25 bp)
GTCATCTCAATCTCTGAATCGTCTG
LOC_Os11g09510
OsAffx.18763.1.S1_at--1021--9471Chr11:5094674..5094698 (25 bp)
TCTGATCATGACAGACTGCGCGTTC
LOC_Os11g09510
OsAffx.18763.1.S1_at--830--7971Chr11:5094644..5094668 (25 bp)
GGATGCCCGCACTCGGATGTCGTTG
LOC_Os11g09510
OsAffx.18763.1.S1_at--822--10691Chr11:5094622..5094646 (25 bp)
TTGCCGGGTCTCATTGCCCTGAAGA
LOC_Os11g09510
OsAffx.18763.1.S1_at--663--3851Chr11:5094604..5094628 (25 bp)
CTGAAGATCACTCTGCTTTCGGGCA
LOC_Os11g09510
OsAffx.18763.1.S1_at--416--5651Chr11:5094545..5094569 (25 bp)
GACAGCAATTGTGTCACTGCATTGT
LOC_Os11g09510
OsAffx.18763.1.S1_at--500--1671Chr11:5094460..5094484 (25 bp)
AGCCGTTTGCTCCAAGGGTTGTCAG
LOC_Os11g09510
OsAffx.18763.1.S1_at--1055--3611Chr11:5094425..5094449 (25 bp)
CTTGTGTTTGTTAGCTCATCGTCGA
LOC_Os11g09510
OsAffx.18763.1.S1_at--562--4411Chr11:5093897..5093921 (25 bp)
GCCACGAGAACAGTCATTTGCATTT
LOC_Os11g09510
Target Sequence 
ATCGCTTCTGGATCTGATCTTGCACCGCTGCTACATCGACGCTGTGCAGATGTCATCTCAATCTCTGAATCGTCTGATCA
TGACAGACTGCGCGTTCTTGGTGGATGCCCGCACTCGGATGTCGTTGCCGGGTCTCATTGCCCTGAAGATCACTCTGCTT
TCGGGCAGGGCTCCATTTCTTGAAAGCATGCCATTGTTAGAGACAGCAATTGTGTCACTGCATTGTGATTGTGGTGATAA
ATGGGGTTGGACTGGCTATACTAGGTCTGATAATGATAAAAGCATCAGCCGTTTGCTCCAAGGGTTGTCAGAAGCTACAA
ACTTGTGTTTGTTAGCTCATCGTCGAGTGTGTATTTTGAACGCAGATTTGAAGTGGTGCCCTACATTTAGCAAATTGAAG
AATCTGGTACGAACATATTCATTACAAACAACTGAAAGATACAAGCCACGAGAACAGTCATTTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis