Browse Element(s) Details


OsAffx.30900.1.S1_at

Description tigr:9639.m00897
TID=OsAffx.30900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=copia polyprotein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0954011/11hypothetical protein
LOC_Os11g095301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09490Os.54744.1.S1_at3/1111+5081529..5083880F-box domain containing protein
LOC_Os11g09500NANA11+5086336..5088670F-box domain containing protein
LOC_Os11g09510OsAffx.18763.1.S1_at11/1111+5092787..5095348F-box domain containing protein
LOC_Os11g09520NANA11+5099306..5100973retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09530OsAffx.30900.1.S1_at1/1111+5102435..5104871retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09530Os.46601.1.S1_at1/1111+5102435..5104871retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09540OsAffx.30900.1.S1_at11/1111+5106065..5106358hypothetical protein
LOC_Os11g09550NANA11+5107047..5108968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09560NANA11+5116547..5116843hypothetical protein
LOC_Os11g09570OsAffx.18765.1.S1_at11/1111+5117672..5118758hypothetical protein
LOC_Os11g09580NANA11+5121038..5122933F-box domain containing protein
LOC_Os11g09590Os.14731.1.S1_at10/1111+5124780..5127442F-box domain containing protein
LOC_Os11g09600OsAffx.30901.1.S1_at11/1111+5131169..5133396F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30900.1.S1_at--733--4691Chr11:5106120..5106144 (25 bp)
GCGGCAACAAAACTGCCTGTTTCAA
LOC_Os11g09540
OsAffx.30900.1.S1_at--109--4471Chr11:5106134..5106158 (25 bp)
GCCTGTTTCAAGTGTGGTTGCTACA
LOC_Os11g09540
OsAffx.30900.1.S1_at--1029--7473Chr11:5106145..5106169 (25 bp)
GTGTGGTTGCTACAATCATATTGCT
LOC_Os11g09540
OsAffx.30900.1.S1_at--1070--51Chr11:5106164..5106188 (25 bp)
ATTGCTAAGAAATGTAGGACCCCTA
LOC_Os11g09540
OsAffx.30900.1.S1_at--31--931Chr11:5106179..5106203 (25 bp)
AGGACCCCTAAGCATCTTGTTGAAC
LOC_Os11g09540
OsAffx.30900.1.S1_at--35--6651Chr11:5106197..5106221 (25 bp)
GTTGAACACTTCACTCTGGAGACTG
LOC_Os11g09540
OsAffx.30900.1.S1_at--167--8531Chr11:5106213..5106237 (25 bp)
TGGAGACTGGAGCTACGGACCCCAT
LOC_Os11g09540
OsAffx.30900.1.S1_at--291--9851Chr11:5106226..5106250 (25 bp)
TACGGACCCCATTCCGGAAGGATCG
LOC_Os11g09540
OsAffx.30900.1.S1_at--715--7552Chr11:5106250..5106274 (25 bp)
GGGACCGAGCAAAACCAAGACTCTG
LOC_Os11g09540
OsAffx.30900.1.S1_at--820--6191Chr11:5106284..5106308 (25 bp)
GAGGAATGCTCTTTGGACATCGACA
LOC_Os11g09540
OsAffx.30900.1.S1_at--499--5671Chr11:5106299..5106323 (25 bp)
GACATCGACAACATGCTCGTGGAAT
LOC_Os11g09540
Target Sequence 
GCGGCAACAAAACTGCCTGTTTCAAGTGTGGTTGCTACAATCATATTGCTAAGAAATGTAGGACCCCTAAGCATCTTGTT
GAACACTTCACTCTGGAGACTGGAGCTACGGACCCCATTCCGGAAGGATCGGGACCGAGCAAAACCAAGACTCTGCCAAG
TGAAGAGGAATGCTCTTTGGACATCGACAACATGCTCGTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis