Browse Element(s) Details


OsAffx.30901.1.S1_at

Description tigr:9639.m00903
TID=OsAffx.30901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0960011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09540OsAffx.30900.1.S1_at11/1111+5106065..5106358hypothetical protein
LOC_Os11g09550NANA11+5107047..5108968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09560NANA11+5116547..5116843hypothetical protein
LOC_Os11g09570OsAffx.18765.1.S1_at11/1111+5117672..5118758hypothetical protein
LOC_Os11g09580NANA11+5121038..5122933F-box domain containing protein
LOC_Os11g09590Os.14731.1.S1_at10/1111+5124780..5127442F-box domain containing protein
LOC_Os11g09600OsAffx.30901.1.S1_at11/1111+5131169..5133396F-box domain containing protein
LOC_Os11g09610OsAffx.18766.1.S1_at11/1111+5134377..5134731hypothetical protein
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30901.1.S1_at--123--51Chr11:5132400..5132421 (22 bp)
ATTGTCACCTTCCTATCAGATGTTG
LOC_Os11g09600
OsAffx.30901.1.S1_at--752--3111Chr11:5132159..5132183 (25 bp)
AATTTGGACGGTGGCTTCCATGCAC
LOC_Os11g09600
OsAffx.30901.1.S1_at--723--651Chr11:5132140..5132164 (25 bp)
ATGCACTACTTTGCTTTCTTCAGCA
LOC_Os11g09600
OsAffx.30901.1.S1_at--52--10311Chr11:5132126..5132150 (25 bp)
TTTCTTCAGCAGACACCTGTTGTAC
LOC_Os11g09600
OsAffx.30901.1.S1_at--1084--1431Chr11:5132101..5132125 (25 bp)
AGAAGCTCACACTTAAACTCCGTAA
LOC_Os11g09600
OsAffx.30901.1.S1_at--780--6471Chr11:5131974..5131998 (25 bp)
GATACATGGCCCTACTGTGGATATA
LOC_Os11g09600
OsAffx.30901.1.S1_at--696--1371Chr11:5131934..5131958 (25 bp)
AGACCAGTTGTACTGCGGCATCTTA
LOC_Os11g09600
OsAffx.30901.1.S1_at--504--991Chr11:5131281..5131305 (25 bp)
AGGAGGCAAGGAGTACCACCCCTGT
LOC_Os11g09600
OsAffx.30901.1.S1_at--173--7432Chr11:5131258..5131282 (25 bp)
GTGTTCATGTGTTGCTATGCTCACA
LOC_Os11g09600
OsAffx.30901.1.S1_at--614--271Chr11:5131234..5131258 (25 bp)
ATAGATTGCAGTGGGCAGGCCTCTG
LOC_Os11g09600
OsAffx.30901.1.S1_at--228--9031Chr11:5131206..5131230 (25 bp)
TGCAGCGCCTTCGATTATCAGTTAG
LOC_Os11g09600
Target Sequence 
ATTGTCACCTTCCTATCAGATGTTGACCTTTGAAAGGGATCTAAGATGGTGCCCCACATTTAGTAATTTAAGAACGTTGG
TACTCAGTGATTATAATTTGGACGGTGGCTTCCATGCACTACTTTGCTTTCTTCAGCAGACACCTGTTGTACAGAAGCTC
ACACTTAAACTCCGTAAGATACATGGCCCTACTGTGGATATATCCAGCTATCTCAAAAGACCAGTTGTACTGCGGCATCT
TAGGATAGTTGAAGTTAAATGCCCAGTATCTGTTCAAGAAGAGATTTTCAAACTTTGGAAGATCTTGATTACCTGGGGGA
GATATATTGTGCAATTTAATATCGAAAGTACACATTACAGATTAGATTGGACAATCAAAATGCCAAAATTATCTGGCAGA
TTAGCGAAACAGCACAGGAGTATGGCCAAGGAGGCAAGGAGTACCACCCCTGTGTTCATGTGTTGCTATGCTCACATAGA
TTGCAGTGGGCAGGCCTCTGGGGTGCAGCGCCTTCGATTATCAGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis