Browse Element(s) Details


Os.24499.1.S1_at

Description gb:AK063427.1
DB_XREF= gi:32973445
TID=Os.24499.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D03, full insert sequence.
FL= gb:AK063427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0964011/11F-box domain containing protein, expressed
LOC_Os11g099701/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09590Os.14731.1.S1_at10/1111+5124780..5127442F-box domain containing protein
LOC_Os11g09600OsAffx.30901.1.S1_at11/1111+5131169..5133396F-box domain containing protein
LOC_Os11g09610OsAffx.18766.1.S1_at11/1111+5134377..5134731hypothetical protein
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified
LOC_Os11g09670OsAffx.18767.1.S1_at11/1111+5159981..5162213F-box domain containing protein, expressed
LOC_Os11g09680Os.17219.2.S1_s_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680OsAffx.30905.2.S1_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.1.S1_at10/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.2.S1_x_at3/1111+5164307..5166740expressed protein
LOC_Os11g09690OsAffx.30905.3.S1_at11/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.2.S1_at7/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690Os.17219.2.S1_x_at4/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.4.S1_at1/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09700Os.32285.1.S1_at2/1111+5173963..5174537Flavonol 3-O-glucosyltransferase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24499.1.S1_at--797--111Chr11:5150307..5150328 (22 bp)
ATTCTTCAGCTCTATTCCGAGGGTC
LOC_Os11g09640
Os.24499.1.S1_at--787--9291Chr11:5150199..5150219 (21 bp)
TCCGAGGGTCCTAAGCATACAATGA
LOC_Os11g09640
Os.24499.1.S1_at--422--1311Chr11:5148837..5148861 (25 bp)
AGATGATTGATGCACCACCTTTTGA
LOC_Os11g09640
Os.24499.1.S1_at--667--6312Chr11:5148829..5148853 (25 bp)
GATGCACCACCTTTTGATTATTCAG
LOC_Os11g09640
Os.24499.1.S1_at--30--9831Chr11:5148782..5148806 (25 bp)
TAACATGATGTGTTTTTCTCCGTGA
LOC_Os11g09640
Os.24499.1.S1_at--671--10591Chr11:5148767..5148791 (25 bp)
TTCTCCGTGAGTAGCCTGAAGGGCA
LOC_Os11g09640
Os.24499.1.S1_at--475--3651Chr11:5148740..5148764 (25 bp)
CTTCTGGATTCGTAACTGGTTGCTA
LOC_Os11g09640
Os.24499.1.S1_at--1162--7991Chr11:5148711..5148735 (25 bp)
GGATGGCAATGGTACCTGTTTGTCA
LOC_Os11g09640
Os.24499.1.S1_at--442--3871Chr11:5148696..5148720 (25 bp)
CTGTTTGTCAGTTTACCCATAGGTG
LOC_Os11g09640
Os.24499.1.S1_at--342--5271Chr11:5148641..5148665 (25 bp)
GAATGCTTTGCATTTTAGTGCCTAT
LOC_Os11g09640
Os.24499.1.S1_at--382--10071Chr11:5148626..5148650 (25 bp)
TAGTGCCTATGGGTTCTTATTGGAT
LOC_Os11g09640
Target Sequence 
ATTCTTCAGCTCTATTCCGAGGGTCCTAAGCATACAATGAAAATCAAAGGAAACTGTCATCCAATGGATAGATCAGCTGC
AATATCAGGACACCTTGAGACAGTTGAAATCAGATGTGAAGTGGTTGATAAGAGAGTACTCAAAGTTTTGAAGTACCTGT
CTACATTTAACATACTTTTCAGTTTTGAGCAAGTCAAGATTTCTGAAGAAGATGACAGTGATGACAATGACCAAGAGGAT
GAGGAAGATGATGATGACGACTTTTATGGAGAGGAGGAGGAAGAGGAAGAAGAGGATGACGAAGATGAAGATGATTGATG
CACCACCTTTTGATTATTCAGAAGGTTGACACCACAAGGATGATAACATGATGTGTTTTTCTCCGTGAGTAGCCTGAAGG
GCAGACTTCTGGATTCGTAACTGGTTGCTATTAGGGATGGCAATGGTACCTGTTTGTCAGTTTACCCATAGGTGAAAACT
CTATTGGAGTTAGATATGTTCGGAGAATGCTTTGCATTTTAGTGCCTATGGGTTCTTATTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis