Browse Element(s) Details


Os.24499.2.S1_at

Description gb:AK122020.1
DB_XREF= gi:37991643
TID=Os.24499.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111N03, full insert sequence.
FL= gb:AK122020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g096408/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09590Os.14731.1.S1_at10/1111+5124780..5127442F-box domain containing protein
LOC_Os11g09600OsAffx.30901.1.S1_at11/1111+5131169..5133396F-box domain containing protein
LOC_Os11g09610OsAffx.18766.1.S1_at11/1111+5134377..5134731hypothetical protein
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified
LOC_Os11g09670OsAffx.18767.1.S1_at11/1111+5159981..5162213F-box domain containing protein, expressed
LOC_Os11g09680Os.17219.2.S1_s_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680OsAffx.30905.2.S1_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.1.S1_at10/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.2.S1_x_at3/1111+5164307..5166740expressed protein
LOC_Os11g09690OsAffx.30905.3.S1_at11/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.2.S1_at7/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690Os.17219.2.S1_x_at4/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.4.S1_at1/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09700Os.32285.1.S1_at2/1111+5173963..5174537Flavonol 3-O-glucosyltransferase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24499.2.S1_at--950--6231Chr11:5150646..5150670 (25 bp)
GATGGAACCATATCGGTATGCTTGC
LOC_Os11g09640
Os.24499.2.S1_at--1132--7851Chr11:5150632..5150656 (25 bp)
GGTATGCTTGCATGTTAATTCAATT
LOC_Os11g09640
Os.24499.2.S1_at--1159--191Chr11:5150605..5150629 (25 bp)
ATTTCCCATTATTTCTATTGTTGTT
LOC_Os11g09640
Os.24499.2.S1_at--406--10791Chr11:5150588..5150612 (25 bp)
TTGTTGTTTCTATATCAACATCTGG
LOC_Os11g09640
Os.24499.2.S1_at--192--3911Chr11:5150567..5150591 (25 bp)
CTGGATGTTCATGAAGATGTCTTTT
LOC_Os11g09640
Os.24499.2.S1_at--1060--151Chr11:5150540..5150564 (25 bp)
ATTATCTTATTCACATCCATTCTAG
LOC_Os11g09640
Os.24499.2.S1_at--972--3531Chr11:5150527..5150551 (25 bp)
CATCCATTCTAGTCAATTATTGTCT
LOC_Os11g09640
Os.24499.2.S1_at--670--10151NONE
TATCTTATTCAGTATGAGACTTGCT
NONE
Os.24499.2.S1_at--939--6911NONE
GTATGAGACTTGCTTATCCTTTCTT
NONE
Os.24499.2.S1_at--73--5691NONE
GACTTGCTTATCCTTTCTTTTTCTA
NONE
Os.24499.2.S1_at--554--10431Chr11:5150471..5150495 (25 bp)
TTATCCTTTCTTTTTCTATTGTCCA
LOC_Os11g09640
Target Sequence 
GATGGAACCATATCGGTATGCTTGCATGTTAATTCAATTATATTTCCCATTATTTCTATTGTTGTTTCTATATCAACATC
TGGATGTTCATGAAGATGTCTTTTGAATTATCTTATTCACATCCATTCTAGTCAATTATTGTCTTTTGAATTATCTTATT
CAGTATGAGACTTGCTTATCCTTTCTTTTTCTATTGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24499.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis