Browse Element(s) Details


Os.14731.1.S1_at

Description gb:AK062276.1
DB_XREF= gi:32972294
TID=Os.14731.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-B04, full insert sequence.
FL= gb:AK062276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0959010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09520NANA11+5099306..5100973retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09530OsAffx.30900.1.S1_at1/1111+5102435..5104871retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09530Os.46601.1.S1_at1/1111+5102435..5104871retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09540OsAffx.30900.1.S1_at11/1111+5106065..5106358hypothetical protein
LOC_Os11g09550NANA11+5107047..5108968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09560NANA11+5116547..5116843hypothetical protein
LOC_Os11g09570OsAffx.18765.1.S1_at11/1111+5117672..5118758hypothetical protein
LOC_Os11g09580NANA11+5121038..5122933F-box domain containing protein
LOC_Os11g09590Os.14731.1.S1_at10/1111+5124780..5127442F-box domain containing protein
LOC_Os11g09600OsAffx.30901.1.S1_at11/1111+5131169..5133396F-box domain containing protein
LOC_Os11g09610OsAffx.18766.1.S1_at11/1111+5134377..5134731hypothetical protein
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14731.1.S1_at--774--6631Chr11:5126109..5126133 (25 bp)
GTTGTCGTGGCGTACAAGCTGAGAA
LOC_Os11g09590
Os.14731.1.S1_at--61--4671Chr11:5126136..5126160 (25 bp)
GCGTGCTTCTGCGAGGTTTATCAGA
LOC_Os11g09590
Os.14731.1.S1_at--194--1471Chr11:5126166..5126190 (25 bp)
AGAATCTGGCATTGGTAGCTGAAAC
LOC_Os11g09590
Os.14731.1.S1_at--134--5331Chr11:5126292..5126316 (25 bp)
GAAGTGGTGCCCTATCTTTAGGAAT
LOC_Os11g09590
Os.14731.1.S1_at--107--671NONE
ATGAATGCTGGTGTGTGCTTTCCGA
NONE
Os.14731.1.S1_at--427--8691Chr11:5125994..5126373 (25 bp)
TGTGCTTTCCGATTTGAGTGCGCTA
LOC_Os11g09590
Os.14731.1.S1_at--499--6111Chr11:5126364..5126388 (25 bp)
GAGTGCGCTAGCATGCATTCTTCAG
LOC_Os11g09590
Os.14731.1.S1_at--1016--7711Chr11:5126565..5126589 (25 bp)
GGGTGTCAGCTGCAATGTTAAAATA
LOC_Os11g09590
Os.14731.1.S1_at--412--7411Chr11:5126631..5126655 (25 bp)
GTGTTCTCGATGTTTTGAAGTTCCT
LOC_Os11g09590
Os.14731.1.S1_at--367--5331Chr11:5126647..5126671 (25 bp)
GAAGTTCCTAAGCTCACTTAACATA
LOC_Os11g09590
Os.14731.1.S1_at--21--6471Chr11:5126677..5126701 (25 bp)
GATAACTACTGGCACTCATGCCTTT
LOC_Os11g09590
Target Sequence 
GTTGTCGTGGCGTACAAGCTGAGAACNTGCGTGCTTCTGCGAGGTTTATCAGAAGCTAAGAATCTGGCATTGGTAGCTGA
AACTAAAATGTTTGTTTTCAGAAGAGANTTGAAGTGGTGCCCTATCTTTAGGAATTTGAAGACTTTGTTACTCAATGAAT
GCTGGTGTGTGCTTTCCGATTTGAGTGCGCTAGCATGCATTCTTCAGCATTNCACCTGTTTTAGAAAAGCTCACTCTTNC
AACTTTTTTCGATGGGACCTAAACATAAAGTGNAAATGAAGGGAAGCCGCCATCCATCGGGGGTGTCAGCTGCAATGTTA
AAATATCTTGAGATTGTCGAGGTCNAAATGTGAAGTGGTTGATGAGAGTGTTCTCGATGTTTTGAAGTTCCTAAGCTCAC
TTAACATATGTAAGATAACTACTGGCACTCATGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis