Browse Element(s) Details


OsAffx.18766.1.S1_at

Description tigr:9639.m00904
TID=OsAffx.18766.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0961011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09560NANA11+5116547..5116843hypothetical protein
LOC_Os11g09570OsAffx.18765.1.S1_at11/1111+5117672..5118758hypothetical protein
LOC_Os11g09580NANA11+5121038..5122933F-box domain containing protein
LOC_Os11g09590Os.14731.1.S1_at10/1111+5124780..5127442F-box domain containing protein
LOC_Os11g09600OsAffx.30901.1.S1_at11/1111+5131169..5133396F-box domain containing protein
LOC_Os11g09610OsAffx.18766.1.S1_at11/1111+5134377..5134731hypothetical protein
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18766.1.S1_at--429--9111Chr11:5134514..5134538 (25 bp)
TGCTCCAAAAACAACTTGCAGGACT
LOC_Os11g09610
OsAffx.18766.1.S1_at--960--2511Chr11:5134502..5134526 (25 bp)
AACTTGCAGGACTTTGACTCTTTGA
LOC_Os11g09610
OsAffx.18766.1.S1_at--504--9051Chr11:5134498..5134522 (25 bp)
TGCAGGACTTTGACTCTTTGAGGTG
LOC_Os11g09610
OsAffx.18766.1.S1_at--762--5691Chr11:5134493..5134517 (25 bp)
GACTTTGACTCTTTGAGGTGGACAA
LOC_Os11g09610
OsAffx.18766.1.S1_at--822--1051Chr11:5134478..5134502 (25 bp)
AGGTGGACAACCTGCCTCTTGTCGA
LOC_Os11g09610
OsAffx.18766.1.S1_at--1141--8511Chr11:5134475..5134499 (25 bp)
TGGACAACCTGCCTCTTGTCGATCT
LOC_Os11g09610
OsAffx.18766.1.S1_at--825--4031Chr11:5134456..5134480 (25 bp)
CGATCTCCCGGCACTTGAAGAGGCT
LOC_Os11g09610
OsAffx.18766.1.S1_at--973--5351Chr11:5134440..5134464 (25 bp)
GAAGAGGCTAGAGCTCGTTTCGCAT
LOC_Os11g09610
OsAffx.18766.1.S1_at--863--911Chr11:5134436..5134460 (25 bp)
AGGCTAGAGCTCGTTTCGCATAGTG
LOC_Os11g09610
OsAffx.18766.1.S1_at--440--5891Chr11:5134430..5134454 (25 bp)
GAGCTCGTTTCGCATAGTGCTAACC
LOC_Os11g09610
OsAffx.18766.1.S1_at--1140--10611Chr11:5134422..5134446 (25 bp)
TTCGCATAGTGCTAACCAACAGATT
LOC_Os11g09610
Target Sequence 
TGCTCCAAAAACAACTTGCAGGACTTTGACTCTTTGAGGTGGACAACCTGCCTCTTGTCGATCTCCCGGCACTTGAAGAG
GCTAGAGCTCGTTTCGCATAGTGCTAACCAACAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis