Browse Element(s) Details


OsAffx.30905.1.S1_at

Description tigr:9639.m00941
TID=OsAffx.30905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0997011/11F-box domain containing protein, expressed
LOC_Os11g096401/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09940Os.18594.1.S1_at11/1111+5320235..5323128expressed protein
LOC_Os11g09940Os.18594.1.S2_at11/1111+5320235..5323128expressed protein
LOC_Os11g09950NANA11+5327559..5328579Transposable element protein, putative, Retrotrans_gag
LOC_Os11g09960OsAffx.30905.4.S1_at10/1111+5332325..5335972hypothetical protein
LOC_Os11g09960OsAffx.30905.2.S1_at3/1111+5332325..5335972hypothetical protein
LOC_Os11g09960Os.17219.2.S1_x_at2/1111+5332325..5335972hypothetical protein
LOC_Os11g09970OsAffx.30905.1.S1_at11/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.17219.2.S1_x_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.24499.1.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970OsAffx.30905.2.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09980OsAffx.26161.1.S1_at10/1111+5345729..5347368hypothetical protein
LOC_Os11g09990Os.22922.1.S1_at11/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g09990OsAffx.30913.1.S1_at1/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g10000Os.51881.1.S1_at10/1111+5358656..5360424mTERF family protein, expressed
LOC_Os11g10010OsAffx.18774.1.S1_at11/1111+5362883..5363562hypothetical protein
LOC_Os11g10020OsAffx.7056.1.S1_at11/1111+5364123..5365737hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30905.1.S1_at--311--51Chr11:5340285..5340309 (25 bp)
ATTGTAGTCATGAGGGCTGTGAATC
LOC_Os11g09970
OsAffx.30905.1.S1_at--126--7331Chr11:5340232..5340256 (25 bp)
GTGCTTCTGGAAGGTTTATCGAACG
LOC_Os11g09970
OsAffx.30905.1.S1_at--915--6811Chr11:5339983..5340243 (25 bp)
GTTTATCGAACGCTAAGACTGCACT
LOC_Os11g09970
OsAffx.30905.1.S1_at--432--9771Chr11:5339970..5340230 (25 bp)
TAAGACTGCACTAGCTTGCATTCTT
LOC_Os11g09970
OsAffx.30905.1.S1_at--511--5491Chr11:5339945..5339969 (25 bp)
GAACATTCACCGGTTCTGGAGAATC
LOC_Os11g09970
OsAffx.30905.1.S1_at--456--3431Chr11:5339822..5339936 (25 bp)
CAGATATATTCTGAGGGACCTGAAC
LOC_Os11g09970
OsAffx.30905.1.S1_at--832--3251Chr11:5339784..5339808 (25 bp)
CAACGGAAACTGCTCTTCAGTGGAT
LOC_Os11g09970
OsAffx.30905.1.S1_at--912--311Chr11:5339316..5339336 (21 bp)
ATACTTTATGTTGATGTTGCCATCT
LOC_Os11g09970
OsAffx.30905.1.S1_at--230--8972Chr11:5339291..5339315 (25 bp)
TGAATTCCAGTTTATTACTTGCTCT
LOC_Os11g09970
OsAffx.30905.1.S1_at--151--151Chr11:5339278..5339302 (25 bp)
ATTACTTGCTCTTATTGCTCCCATG
LOC_Os11g09970
OsAffx.30905.1.S1_at--986--4791Chr11:5339262..5339286 (25 bp)
GCTCCCATGTCATTTGCCATGTGGA
LOC_Os11g09970
Target Sequence 
ATTGTAGTCATGAGGGCTGTGAATCTTGTTATGGTATCAAGGACAACAAATGTGTGCTTCTGGAAGGTTTATCGAACGCT
AAGACTGCACTAGCTTGCATTCTTGAACATTCACCGGTTCTGGAGAATCTCATTCTTCAGATATATTCTGAGGGACCTGA
ACATATAATGAAAATCAACGGAAACTGCTCTTCAGTGGATAGATCAGCTGCAATATCAGCACACCTTGAGATAGTTGAAA
TCAGATGTGAAATGATTGATAACTTTGTAGACGAAGTTTTGAAGTATCTGTCTACATTTAACATACTTTATGTTGATGTT
GCCATCTTGAATTCCAGTTTATTACTTGCTCTTATTGCTCCCATGTCATTTGCCATGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis