Browse Element(s) Details


OsAffx.18774.1.S1_at

Description tigr:9639.m00945
TID=OsAffx.18774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1001011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09970OsAffx.30905.1.S1_at11/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.17219.2.S1_x_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.24499.1.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970OsAffx.30905.2.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09980OsAffx.26161.1.S1_at10/1111+5345729..5347368hypothetical protein
LOC_Os11g09990Os.22922.1.S1_at11/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g09990OsAffx.30913.1.S1_at1/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g10000Os.51881.1.S1_at10/1111+5358656..5360424mTERF family protein, expressed
LOC_Os11g10010OsAffx.18774.1.S1_at11/1111+5362883..5363562hypothetical protein
LOC_Os11g10020OsAffx.7056.1.S1_at11/1111+5364123..5365737hypothetical protein
LOC_Os11g10030OsAffx.18775.1.S1_at11/1111+5366696..5366920hypothetical protein
LOC_Os11g10040Os.24789.1.A1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.1.S1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.2.S1_x_at10/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10050Os.11635.1.S1_at11/1111+5373891..5379346G-protein alpha subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18774.1.S1_at--1087--971Chr11:5363491..5363515 (25 bp)
AGGAGATGAGATGGACGTCCTCGAT
LOC_Os11g10010
OsAffx.18774.1.S1_at--895--5351Chr11:5363463..5363487 (25 bp)
GAAGAGCAGTGCCTCACAGTTGTGA
LOC_Os11g10010
OsAffx.18774.1.S1_at--976--5031Chr11:5363412..5363436 (25 bp)
GCAGAGGGCTACAGTCACTTGGGAC
LOC_Os11g10010
OsAffx.18774.1.S1_at--595--2051Chr11:5363396..5363420 (25 bp)
ACTTGGGACGGCCTGACACACAATG
LOC_Os11g10010
OsAffx.18774.1.S1_at--430--5631Chr11:5363382..5363406 (25 bp)
GACACACAATGGCATCTGAGGGATG
LOC_Os11g10010
OsAffx.18774.1.S1_at--553--5991Chr11:5363345..5363369 (25 bp)
GAGACGGCAGGGACACAGAACGAAA
LOC_Os11g10010
OsAffx.18774.1.S1_at--557--2731Chr11:5363322..5363346 (25 bp)
AAGAATTCGCATCCCAACACTACAG
LOC_Os11g10010
OsAffx.18774.1.S1_at--1005--931Chr11:5363042..5363323 (25 bp)
AGGAATCGTGACTTTCGCGGAGGCT
LOC_Os11g10010
OsAffx.18774.1.S1_at--900--3971Chr11:5363006..5363030 (25 bp)
CGGTGAGCTCGATGGTGGTCAACCA
LOC_Os11g10010
OsAffx.18774.1.S1_at--1073--6271Chr11:5362957..5362981 (25 bp)
GATGTAGATGCCAGCCATTCCAAAC
LOC_Os11g10010
OsAffx.18774.1.S1_at--121--3211Chr11:5362931..5362955 (25 bp)
CAATGGGATGTGTGGACATGCTGTC
LOC_Os11g10010
Target Sequence 
AGGAGATGAGATGGACGTCCTCGATGGTGAAGAGCAGTGCCTCACAGTTGTGAGTACGGTGATCAAGTTGGTGATTGGGG
CAGAGGGCTACAGTCACTTGGGACGGCCTGACACACAATGGCATCTGAGGGATGAGCTGTTAGATGGAGACGGCAGGGAC
ACAGAACGAAAGAATTCGCATCCCAACACTACAGGAATCGTGACTTTCGCGGAGGCTGGGGCGAGGTGCGGTGAGCTCGA
TGGTGGTCAACCATGGGTGGCGGCGTTAGGGGAAGGAGATGTAGATGCCAGCCATTCCAAACACAATGGGATGTGTGGAC
ATGCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis