Browse Element(s) Details


Os.11635.1.S1_at

Description gb:AK069964.1
DB_XREF= gi:32979988
TID=Os.11635.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11635 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039G05, full insert sequence.
FL= gb:AK069964.1 gb:AK119192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1005011/11G-protein alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09990Os.22922.1.S1_at11/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g09990OsAffx.30913.1.S1_at1/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g10000Os.51881.1.S1_at10/1111+5358656..5360424mTERF family protein, expressed
LOC_Os11g10010OsAffx.18774.1.S1_at11/1111+5362883..5363562hypothetical protein
LOC_Os11g10020OsAffx.7056.1.S1_at11/1111+5364123..5365737hypothetical protein
LOC_Os11g10030OsAffx.18775.1.S1_at11/1111+5366696..5366920hypothetical protein
LOC_Os11g10040Os.24789.1.A1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.1.S1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.2.S1_x_at10/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10050Os.11635.1.S1_at11/1111+5373891..5379346G-protein alpha subunit, putative, expressed
LOC_Os11g10060Os.9834.1.S1_a_at9/1111+5394814..5403685SEU3A protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001789biological_processG-protein signaling, coupled to S1P second messenger (sphingosine kinase activating)
GO:0006499biological_processN-terminal protein myristoylation
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0008219biological_processcell death
GO:0009738biological_processabscisic acid mediated signaling
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009845biological_processseed germination
GO:0010119biological_processregulation of stomatal movement
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0005886cellular_componentplasma membrane
GO:0004871molecular_functionsignal transducer activity
GO:0016247molecular_functionchannel regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11635.1.S1_at--482--4031Chr11:5374363..5374387 (25 bp)
CGTTCTACAGCACCACGGAAATGAG
LOC_Os11g10050
Os.11635.1.S1_at--729--3771Chr11:5374335..5374359 (25 bp)
CTCTCCTTTCATCCGAGCAGAATGA
LOC_Os11g10050
Os.11635.1.S1_at--589--5211Chr11:5374312..5374336 (25 bp)
GAATTCGACATTGGCTGCTGAAATC
LOC_Os11g10050
Os.11635.1.S1_at--422--5591Chr11:5374293..5374317 (25 bp)
GAAATCGAATTCTTTGCAACCCGGC
LOC_Os11g10050
Os.11635.1.S1_at--807--6691Chr11:5374255..5374279 (25 bp)
GTTCCTTTCGCCGAATTGGTACAGA
LOC_Os11g10050
Os.11635.1.S1_at--45--7891Chr11:5374197..5374221 (25 bp)
GGTTATCCTGATCGAAATTGTTGCT
LOC_Os11g10050
Os.11635.1.S1_at--1113--2231Chr11:5374183..5374207 (25 bp)
AAATTGTTGCTGTTCATCACCTGAA
LOC_Os11g10050
Os.11635.1.S1_at--652--551Chr11:5374149..5374173 (25 bp)
ATCCGTTGGTCCTGTTGTTGCGCTA
LOC_Os11g10050
Os.11635.1.S1_at--205--8811Chr11:5374134..5374158 (25 bp)
TGTTGCGCTAGCCTGTACTAATTTT
LOC_Os11g10050
Os.11635.1.S1_at--563--7751Chr11:5373998..5374022 (25 bp)
GGTGAACTAACCTTAGCTACACTAG
LOC_Os11g10050
Os.11635.1.S1_at--648--10011Chr11:5373960..5373984 (25 bp)
TAGCAGTTCAGCTGTTCTGTCGGGT
LOC_Os11g10050
Target Sequence 
CGTTCTACAGCACCACGGAAATGAGCTCCTCTCCTTTCATCCGAGCAGAATGAATTCGACATTGGCTGCTGAAATCGAAT
TCTTTGCAACCCGGCGAAAGAGTGCCCGGTTCCTTTCGCCGAATTGGTACAGAAAACATTGGATATGGTTGTATATTGAT
TTTACAGGTTATCCTGATCGAAATTGTTGCTGTTCATCACCTGAAGAGAATAGGATCCGTTGGTCCTGTTGTTGCGCTAG
CCTGTACTAATTTTTTTCGAAACAAATGTACAAAGAAAGAAAGAAAAAGTTGTGTGATATGTTTGTGATTTGTACCAGTA
AAAAGGTAAAAAGCAAAAGTGTGGATGATAGTGGCCATATTGTTTGGTGAACTAACCTTAGCTACACTAGCTGTAAAATC
ATGTAGCAGTTCAGCTGTTCTGTCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis