Browse Element(s) Details


OsAffx.30903.1.S1_at

Description tigr:9639.m00906
TID=OsAffx.30903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0963011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09570OsAffx.18765.1.S1_at11/1111+5117672..5118758hypothetical protein
LOC_Os11g09580NANA11+5121038..5122933F-box domain containing protein
LOC_Os11g09590Os.14731.1.S1_at10/1111+5124780..5127442F-box domain containing protein
LOC_Os11g09600OsAffx.30901.1.S1_at11/1111+5131169..5133396F-box domain containing protein
LOC_Os11g09610OsAffx.18766.1.S1_at11/1111+5134377..5134731hypothetical protein
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified
LOC_Os11g09670OsAffx.18767.1.S1_at11/1111+5159981..5162213F-box domain containing protein, expressed
LOC_Os11g09680Os.17219.2.S1_s_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680OsAffx.30905.2.S1_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.1.S1_at10/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.2.S1_x_at3/1111+5164307..5166740expressed protein
LOC_Os11g09690OsAffx.30905.3.S1_at11/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.2.S1_at7/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690Os.17219.2.S1_x_at4/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.4.S1_at1/1111+5169041..5171650F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30903.1.S1_at--312--9831Chr11:5144794..5144818 (25 bp)
TAAAATCTGTGTCCCCAGTCTTGTT
LOC_Os11g09630
OsAffx.30903.1.S1_at--183--5651Chr11:5144757..5144781 (25 bp)
GACAGCAATTCGAAGACTCCTCTAC
LOC_Os11g09630
OsAffx.30903.1.S1_at--221--9891Chr11:5144735..5144759 (25 bp)
TACTTGAGAGTATGCCATCGTTAGC
LOC_Os11g09630
OsAffx.30903.1.S1_at--1087--6191Chr11:5144709..5144733 (25 bp)
GAGGCAACTGTCAGAGTCACCGCTG
LOC_Os11g09630
OsAffx.30903.1.S1_at--813--1791Chr11:5144691..5144715 (25 bp)
ACCGCTGGATGTTCTGACGTTTGTG
LOC_Os11g09630
OsAffx.30903.1.S1_at--920--9011Chr11:5144631..5144655 (25 bp)
TGCAAGTACTGTTATCCCATCGATG
LOC_Os11g09630
OsAffx.30903.1.S1_at--308--5551Chr11:5144600..5144624 (25 bp)
GAAACTGTGTGCTTCTGAATGGTTT
LOC_Os11g09630
OsAffx.30903.1.S1_at--148--2891Chr11:5144302..5144326 (25 bp)
AAGGGACTTGCAATGGTGCCCTACA
LOC_Os11g09630
OsAffx.30903.1.S1_at--433--8471Chr11:5144234..5144258 (25 bp)
TGGCCCCTGACTTCCATGCATTAAG
LOC_Os11g09630
OsAffx.30903.1.S1_at--715--1551Chr11:5144177..5144201 (25 bp)
AGCTTACTCTTCATCTTTTTTCCAA
LOC_Os11g09630
OsAffx.30903.1.S1_at--59--10171Chr11:5144011..5144035 (25 bp)
TATCAGAGCGCCTTAACATAGTGGA
LOC_Os11g09630
Target Sequence 
TAAAATCTGTGTCCCCAGTCTTGTTTCACTGCAGCTGGACAGCAATTCGAAGACTCCTCTACTTGAGAGTATGCCATCGT
TAGCAGAGGCAACTGTCAGAGTCACCGCTGGATGTTCTGACGTTTGTGGAAATGCTGATTCTGGGTATTGTGGTTTTGAG
GATTGCAAGTACTGTTATCCCATCGATGACAACAGAAACTGTGTGCTTCTGAATGGTTTATCAGAAGCTAAGAATTTGGC
ATTGACAGCTGAATGCAAAACGTTTATTTTCAAAAGGGACTTGCAATGGTGCCCTACATTTAGCAAGCTGAAGACTTTAT
TGCTAAATGACCACTGGTGTGTGGCCCCTGACTTCCATGCATTAAGCTGCATTCTCAAACACTCACCGGTTCTCGAGAAG
CTTACTCTTCATCTTTTTTCCAAGGGACCTGAACATAAAGTAGAATTGAATGGGAGTTTTGGTTTGATGGACAGACCAAC
TGGAATATCAGAGCGCCTTAACATAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis