Browse Element(s) Details


OsAffx.18767.1.S1_at

Description gb:AK071094.1
DB_XREF= gi:32981117
TID=OsAffx.18767.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080G15, full insert sequence.
FL= gb:AK071094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0967011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified
LOC_Os11g09670OsAffx.18767.1.S1_at11/1111+5159981..5162213F-box domain containing protein, expressed
LOC_Os11g09680Os.17219.2.S1_s_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680OsAffx.30905.2.S1_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.1.S1_at10/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.2.S1_x_at3/1111+5164307..5166740expressed protein
LOC_Os11g09690OsAffx.30905.3.S1_at11/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.2.S1_at7/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690Os.17219.2.S1_x_at4/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.4.S1_at1/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09700Os.32285.1.S1_at2/1111+5173963..5174537Flavonol 3-O-glucosyltransferase, putative
LOC_Os11g09710OsAffx.30906.1.S1_at11/1111+5178191..5179575expressed protein
LOC_Os11g09720Os.46053.2.S1_x_at8/1111+5180249..5183483transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18767.1.S1_at--752--10311Chr11:5160227..5160251 (25 bp)
TTTCAGTTTGGAGGAAGCGACGATT
LOC_Os11g09670
OsAffx.18767.1.S1_at--201--931Chr11:5160171..5160195 (25 bp)
AGGCTTGATGCACAAGTTCTTGACA
LOC_Os11g09670
OsAffx.18767.1.S1_at--1031--6851Chr11:5160139..5160163 (25 bp)
GTTTGAGCTGGGAACTACGTTATCT
LOC_Os11g09670
OsAffx.18767.1.S1_at--825--2531Chr11:5160127..5160151 (25 bp)
AACTACGTTATCTTTCCTCTATGTG
LOC_Os11g09670
OsAffx.18767.1.S1_at--246--451Chr11:5160118..5160142 (25 bp)
ATCTTTCCTCTATGTGTTTCTTCAA
LOC_Os11g09670
OsAffx.18767.1.S1_at--439--1431Chr11:5160093..5160117 (25 bp)
AGAACTTTAGCTTTGCCTTGTAATG
LOC_Os11g09670
OsAffx.18767.1.S1_at--966--4851Chr11:5160084..5160108 (25 bp)
GCTTTGCCTTGTAATGGGCCGTTTA
LOC_Os11g09670
OsAffx.18767.1.S1_at--1119--7551Chr11:5160069..5160093 (25 bp)
GGGCCGTTTACATTGTCTAGTGTCT
LOC_Os11g09670
OsAffx.18767.1.S1_at--444--791Chr11:5160036..5160060 (25 bp)
ATGGGTTTCTCATATGCGGATGGTT
LOC_Os11g09670
OsAffx.18767.1.S1_at--385--2272Chr01:19153425..19153753 (25 bp)
AAAGGACCTATTTCACCAAGTAGTG
NONE
OsAffx.18767.1.S1_at--981--3351Chr11:5159984..5160008 (25 bp)
CACCAAGTAGTGCTAATTTATCCCT
LOC_Os11g09670
Target Sequence 
TTTCAGTTTGGAGGAAGCGACGATTGAGAGTTAGATGATCATGATGATGACGAAAAAGGCTTGATGCACAAGTTCTTGAC
AATTAGAAGTTTGAGCTGGGAACTACGTTATCTTTCCTCTATGTGTTTCTTCAAAGAACTTTAGCTTTGCCTTGTAATGG
GCCGTTTACATTGTCTAGTGTCTACCTAGAAATGGGTTTCTCATATGCGGATGGTTTGAAATTGATTGTAAAAGGACCTA
TTTCACCAAGTAGTGCTAATTTATCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis