Browse Element(s) Details


OsAffx.30906.1.S1_at

Description tigr:9639.m00916
TID=OsAffx.30906.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0971011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified
LOC_Os11g09670OsAffx.18767.1.S1_at11/1111+5159981..5162213F-box domain containing protein, expressed
LOC_Os11g09680Os.17219.2.S1_s_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680OsAffx.30905.2.S1_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.1.S1_at10/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.2.S1_x_at3/1111+5164307..5166740expressed protein
LOC_Os11g09690OsAffx.30905.3.S1_at11/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.2.S1_at7/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690Os.17219.2.S1_x_at4/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.4.S1_at1/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09700Os.32285.1.S1_at2/1111+5173963..5174537Flavonol 3-O-glucosyltransferase, putative
LOC_Os11g09710OsAffx.30906.1.S1_at11/1111+5178191..5179575expressed protein
LOC_Os11g09720Os.46053.2.S1_x_at8/1111+5180249..5183483transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09730NANA11+5187897..5188196retrotransposon protein, putative, unclassified
LOC_Os11g09740OsAffx.7052.1.S1_at11/1111+5193988..5195544hypothetical protein
LOC_Os11g09750OsAffx.23366.2.S1_s_at1/1111+5201426..5204842transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30906.1.S1_at--329--811Chr11:5178986..5179010 (25 bp)
ATGGGATTTCTTTTCTCCTTGGAGA
LOC_Os11g09710
OsAffx.30906.1.S1_at--767--7471Chr11:5179035..5179059 (25 bp)
GTGTGTTGATTTACCTCCAATCCCA
LOC_Os11g09710
OsAffx.30906.1.S1_at--100--3231Chr11:5179071..5179095 (25 bp)
CAAGAGTTACTTTCGTGTTGACCGT
LOC_Os11g09710
OsAffx.30906.1.S1_at--258--1111Chr11:5179129..5179153 (25 bp)
AGTGGGTATCCCTTGACAGCTGGAA
LOC_Os11g09710
OsAffx.30906.1.S1_at--813--1611Chr11:5179146..5179170 (25 bp)
AGCTGGAATGCTTCATGGCACCTTA
LOC_Os11g09710
OsAffx.30906.1.S1_at--1103--7751Chr11:5179186..5179210 (25 bp)
GGTGACCAATACTATTATGCTCCTA
LOC_Os11g09710
OsAffx.30906.1.S1_at--905--9111Chr11:5179224..5179248 (25 bp)
TGCTGATGCTCACGCGATTACATTG
LOC_Os11g09710
OsAffx.30906.1.S1_at--796--5991Chr11:5179285..5179309 (25 bp)
GAGACGTTCTATTCAGCCAGAGATT
LOC_Os11g09710
OsAffx.30906.1.S1_at--598--3731Chr11:5179319..5179343 (25 bp)
CTAAATCCCATCCTGACCATAAGAT
LOC_Os11g09710
OsAffx.30906.1.S1_at--918--1291Chr11:5179340..5179364 (25 bp)
AGATGCGTGACTTCGGTGCAGACTT
LOC_Os11g09710
OsAffx.30906.1.S1_at--996--5031Chr11:5179357..5179381 (25 bp)
GCAGACTTTTTTCTTTGGGCATGTG
LOC_Os11g09710
Target Sequence 
ATGGGATTTCTTTTCTCCTTGGAGAATATGATACCTTGCTTCAAAATAAGTGTGTTGATTTACCTCCAATCCCACGTCTT
AGGATCAAGAGTTACTTTCGTGTTGACCGTAACAATGTTCTTCTTATTACTCGATTGTTGGCGAGTGGGTATCCCTTGAC
AGCTGGAATGCTTCATGGCACCTTATATTGGTATCTTAAAGGTGACCAATACTATTATGCTCCTAAATGTGCAACTACTG
CTGATGCTCACGCGATTACATTGATTGGATCTGGGTTGGCTTCTAAGAACAATATGCCTGAGACGTTCTATTCAGCCAGA
GATTCACATGGGACTAAATCCCATCCTGACCATAAGATGCGTGACTTCGGTGCAGACTTTTTTCTTTGGGCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis