Browse Element(s) Details


OsAffx.7052.1.S1_at

Description tigr:9639.m00919
TID=OsAffx.7052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0974011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09690OsAffx.30905.3.S1_at11/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.2.S1_at7/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690Os.17219.2.S1_x_at4/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.4.S1_at1/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09700Os.32285.1.S1_at2/1111+5173963..5174537Flavonol 3-O-glucosyltransferase, putative
LOC_Os11g09710OsAffx.30906.1.S1_at11/1111+5178191..5179575expressed protein
LOC_Os11g09720Os.46053.2.S1_x_at8/1111+5180249..5183483transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09730NANA11+5187897..5188196retrotransposon protein, putative, unclassified
LOC_Os11g09740OsAffx.7052.1.S1_at11/1111+5193988..5195544hypothetical protein
LOC_Os11g09750OsAffx.23366.2.S1_s_at1/1111+5201426..5204842transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09760Os.46314.3.S1_at2/1111+5206488..5209835transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09760OsAffx.7362.1.S1_x_at2/1111+5206488..5209835transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09770OsAffx.30907.1.S1_at11/1111+5215865..5217643hypothetical protein
LOC_Os11g09780OsAffx.18768.1.S1_at9/1111+5219300..5220636hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7052.1.S1_at--445--6351Chr11:5195485..5195509 (25 bp)
GATGCGTGCGTGGATCTGCTGCCTC
LOC_Os11g09740
OsAffx.7052.1.S1_at--389--4151Chr11:5195293..5195317 (25 bp)
CGCGCGGATCCGTCACCAAGGGCAG
LOC_Os11g09740
OsAffx.7052.1.S1_at--455--2631Chr11:5194179..5194203 (25 bp)
AACCTCGTTCGCTGGCTCCGATTGA
LOC_Os11g09740
OsAffx.7052.1.S1_at--1063--8311Chr11:5194166..5194190 (25 bp)
GGCTCCGATTGACCGGTTCCTCTGT
LOC_Os11g09740
OsAffx.7052.1.S1_at--398--6691Chr11:5194151..5194175 (25 bp)
GTTCCTCTGTCCTCGCTCGGAGTCT
LOC_Os11g09740
OsAffx.7052.1.S1_at--1123--5591Chr11:5194084..5194108 (25 bp)
GACTAGGGCAAGTGGGCAACTCCGT
LOC_Os11g09740
OsAffx.7052.1.S1_at--600--2871Chr11:5194075..5194099 (25 bp)
AAGTGGGCAACTCCGTGACTGCCGT
LOC_Os11g09740
OsAffx.7052.1.S1_at--76--8951Chr11:5194060..5194084 (25 bp)
TGACTGCCGTCTGCGGGCAACTGGC
LOC_Os11g09740
OsAffx.7052.1.S1_at--751--3971Chr11:5194047..5194071 (25 bp)
CGGGCAACTGGCACTGTTGCGATTT
LOC_Os11g09740
OsAffx.7052.1.S1_at--83--3331Chr11:5194036..5194060 (25 bp)
CACTGTTGCGATTTGCGAAGCGAAT
LOC_Os11g09740
OsAffx.7052.1.S1_at--322--211Chr11:5194026..5194050 (25 bp)
ATTTGCGAAGCGAATGCGGACGGCC
LOC_Os11g09740
Target Sequence 
GATGCGTGCGTGGATCTGCTGCCTCTACCTCCCTCCGTCGTTGTCGGCGACTCCCCCGCCCTCCTCCAACACGGATCCGG
CGGCGGCGCCCACCCCCGCGGCGATGACGACCTCGGGCGGCGGCACCACCGCCATCCCCTCCTCACCGTCGCGGCGGCGG
GGACAACTCTACCGCCTCGGGCGGCACCGCCTCGCGCGGATCCGTCACCAAGGGCAGCGGGGGCAGCCGCCGAGGGCCGA
GGCGCAGGCGGCCGAGCACCGCTGTCTGGCCGTCGGGGTCGGGGCCGGGGTGTCGGGCGGCGGCCGGCGCTCCAACCTCG
TTCGCTGGCTCCGATTGACCGGTTCCTCTGTCCTCGCTCGGAGTCTCGCCGTCTCGGTCTCTCCTCGCGGCGCGGCGACG
GACTACGGGACTAGGGCAAGTGGGCAACTCCGTGACTGCCGTCTGCGGGCAACTGGCACTGTTGCGATTTGCGAAGCGAA
TGCGGACGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis