Browse Element(s) Details


OsAffx.18768.1.S1_at

Description tigr:9639.m00923
TID=OsAffx.18768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g097809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09740OsAffx.7052.1.S1_at11/1111+5193988..5195544hypothetical protein
LOC_Os11g09750OsAffx.23366.2.S1_s_at1/1111+5201426..5204842transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09760Os.46314.3.S1_at2/1111+5206488..5209835transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09760OsAffx.7362.1.S1_x_at2/1111+5206488..5209835transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09770OsAffx.30907.1.S1_at11/1111+5215865..5217643hypothetical protein
LOC_Os11g09780OsAffx.18768.1.S1_at9/1111+5219300..5220636hypothetical protein
LOC_Os11g09790Os.46306.1.S1_x_at2/1111+5224122..5230334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09800OsAffx.30908.1.S1_at10/1111+5237021..5238904hypothetical protein
LOC_Os11g09800OsAffx.30908.1.S1_x_at10/1111+5237021..5238904hypothetical protein
LOC_Os11g09810OsAffx.18769.1.S1_at10/1111+5240516..5246459hypothetical protein
LOC_Os11g09810Os.29072.1.S1_at1/1111+5240516..5246459hypothetical protein
LOC_Os11g09810OsAffx.4696.1.S1_at1/1111+5240516..5246459hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18768.1.S1_at--192--9291Chr11:5219349..5219373 (25 bp)
TCCGCCGTCATGTCATTGCATCGGG
LOC_Os11g09780
OsAffx.18768.1.S1_at--904--5871Chr11:5219382..5219406 (25 bp)
GAGCCGCCACTGTGCTGCCCGAGAG
LOC_Os11g09780
OsAffx.18768.1.S1_at--272--3971Chr11:5219426..5219450 (25 bp)
CGGTTGCATTGGGAAGTCGCTGACT
LOC_Os11g09780
OsAffx.18768.1.S1_at--735--31Chr11:5219433..5219457 (25 bp)
ATTGGGAAGTCGCTGACTCGCCTCT
LOC_Os11g09780
OsAffx.18768.1.S1_at--405--8951Chr11:5219446..5219470 (25 bp)
TGACTCGCCTCTGTTCCAGGAAGAT
LOC_Os11g09780
OsAffx.18768.1.S1_at--305--4292Chr11:5219453..5219477 (25 bp)
CCTCTGTTCCAGGAAGATGCCGGGA
LOC_Os11g09780
OsAffx.18768.1.S1_at--1053--5851Chr11:5219489..5219513 (25 bp)
GAGCCAATCCTGAGCCACTGTGCCG
LOC_Os11g09780
OsAffx.18768.1.S1_at--748--4151Chr11:5219512..5219536 (25 bp)
CGCCGAGGAGCCACTGACTTGCCGG
LOC_Os11g09780
OsAffx.18768.1.S1_at--62--2891Chr11:5219640..5219664 (25 bp)
AAGGGCATGGAGAGGCACCGCCAGT
LOC_Os11g09780
OsAffx.18768.1.S1_at--308--7631NONE
GGGACAGAGGCGACCTGTGAACACT
NONE
OsAffx.18768.1.S1_at--35--911NONE
AGGCGACCTGTGAACACTCAAAGAA
NONE
Target Sequence 
TCCGCCGTCATGTCATTGCATCGGGGATCAGCCGAGCCGCCACTGTGCTGCCCGAGAGCCGGGGAGCAGCTGCGCTGCGG
TTGCATTGGGAAGTCGCTGACTCGCCTCTGTTCCAGGAAGATGCCGGGAGGGAGAGGGAGGAGCCAATCCTGAGCCACTG
TGCCGCCGAGGAGCCACTGACTTGCCGGATCTGGCGAGGAGTGGGACGGCAGTGGCACCCCGACGAGGAGGAATTAAAGA
AGCCGGTGGTTGGGGGGCTGGAGGGAGGGGGAGCGGCACCGCTGGAGAGGGAAGGGCATGGAGAGGCACCGCCAGTGGGG
AAGGGGCATGGAGAGGCGCCACCGGTGGGGAAGGGGCATGGAGAGGCGCCACCAATGGGGAAGGGGCACCTCGAGGTGGG
AGGAGGAGCGTCGTTGGTGGGGAGAGAGGAGGGGCGTCGCTGCTGGGGGACAGAGGCGACCTGTGAACACTCAAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis