Browse Element(s) Details


Os.8637.1.S1_at

Description gb:AU174278
DB_XREF= gi:13165481
DB_XREF=AU174278
CLONE=S3018
TID=Os.8637.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.8637 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0935011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09300NANA11+4978545..4984107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g09310Os.17200.1.S1_at10/1111+4986813..4988731Zinc knuckle family protein, expressed
LOC_Os11g09329Os.20320.1.S1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09329Os.16476.1.A1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09350Os.8637.1.S1_at11/1111+5006220..5009423expressed protein
LOC_Os11g09360OsAffx.30899.1.S1_at11/1111+5022178..5023199F-box domain containing protein
LOC_Os11g09370Os.51921.1.S1_at11/1111+5023640..5025395histone deacetylase, putative, expressed
LOC_Os11g09380OsAffx.18762.1.S1_at11/1111+5028891..5031282transposon protein, putative, unclassified
LOC_Os11g09390Os.2987.3.S1_x_at2/1111+5032186..5032998retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8637.1.S1_at--1061--3391Chr11:5008538..5008562 (25 bp)
CAGCATCGGAAATGGCCATGGCGGC
LOC_Os11g09350
Os.8637.1.S1_at--1039--8351Chr11:5008516..5008540 (25 bp)
GGCGGCAACCCGAAGGCTCAAACAA
LOC_Os11g09350
Os.8637.1.S1_at--991--5191Chr11:5006701..5006725 (25 bp)
GAATTGGGTGCTATGGTTTCTTCAA
LOC_Os11g09350
Os.8637.1.S1_at--638--4911Chr11:5006590..5006614 (25 bp)
GCTTCTGTAGTGATCTGCTTATACA
LOC_Os11g09350
Os.8637.1.S1_at--458--7351Chr11:5006459..5006483 (25 bp)
GTGCAATGTGCACCACTATGACTGG
LOC_Os11g09350
Os.8637.1.S1_at--301--2411Chr11:5006377..5006401 (25 bp)
AAACACCCTGCATTGGCACTGAGAT
LOC_Os11g09350
Os.8637.1.S1_at--771--3331Chr11:5006361..5006385 (25 bp)
CACTGAGATCTTTTATTTGCAACAC
LOC_Os11g09350
Os.8637.1.S1_at--220--3272Chr11:5006342..5006366 (25 bp)
CAACACATTTCCTGTACTTTCTGAA
LOC_Os11g09350
Os.8637.1.S1_at--771--5571Chr11:5006320..5006344 (25 bp)
GAAAGTCTCACATCTCTTGTACTAT
LOC_Os11g09350
Os.8637.1.S1_at--962--451Chr11:5006309..5006333 (25 bp)
ATCTCTTGTACTATTCCTCTGTCTG
LOC_Os11g09350
Os.8637.1.S1_at--120--9271Chr11:5006295..5006319 (25 bp)
TCCTCTGTCTGTACATGTCCTAATG
LOC_Os11g09350
Target Sequence 
CAGCATCGGAAATGGCCATGGCGGCGGCAACCCGAAGGCTCAAACAACCAGGAGCAGGAGCAGAAAGAGAATTGGGTGCT
ATGGTTTCTTCAAGAAAAACAAAAGCAAAAATGGAGGTGCTGAAGATTAGAACATGATGCAAATGAAGAAGTGGGCTACA
TCCAGGAAGAGGATATAAAGCTTCTGTAGTGATCTGCTTATACAACAAGCATCAGCATGCAAAAGGAGCTCATGCAATGA
TGCAAAAACACCAACTTTGNCATACNATNAAAATCANGTGCNAAGATGCATGAAACGATATGACACCAGNTGAAAAGTGC
AATGTGCACCACTATGACTGGNCTCACACACACAGAGATTATTTAGAGAGGGAAAGGAATGCATAAAAATACAGAGGACA
AACACCCTGCATTGGCACTGAGATCTTTTATTTGCAACACATTTCCTGTACTTTCTGAAAGTCTCACATCTCTTGTACTA
TTCCTCTGTCTGTACATGTCCTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis