Browse Element(s) Details


Os.16476.1.A1_at

Description gb:CF277273
DB_XREF= gi:33654659
DB_XREF=14ETL--02-L23.g1
CLONE=14ETL--02-L23
TID=Os.16476.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16476 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0932911/11VHS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09270OsAffx.30898.1.S1_at10/1111+4964702..4965853hypothetical protein
LOC_Os11g09280Os.10985.1.S1_at11/1111+4967059..4970854Protein disulfide-isomerase precursor, putative, expressed
LOC_Os11g09290NANA11+4972825..4975422retrotransposon protein, putative, unclassified
LOC_Os11g09300NANA11+4978545..4984107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g09310Os.17200.1.S1_at10/1111+4986813..4988731Zinc knuckle family protein, expressed
LOC_Os11g09329Os.20320.1.S1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09329Os.16476.1.A1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09350Os.8637.1.S1_at11/1111+5006220..5009423expressed protein
LOC_Os11g09360OsAffx.30899.1.S1_at11/1111+5022178..5023199F-box domain containing protein
LOC_Os11g09370Os.51921.1.S1_at11/1111+5023640..5025395histone deacetylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16476.1.A1_at--743--10711Chr11:4993071..4993095 (25 bp)
TTGCTGTTTCTTTATGCCTTGCTTT
LOC_Os11g09329
Os.16476.1.A1_at--162--4891Chr11:4993051..4993075 (25 bp)
GCTTTGTTCTATTTTTCCCATTCTC
LOC_Os11g09329
Os.16476.1.A1_at--970--10851Chr11:4993010..4993034 (25 bp)
TTGGTTGGAACAAGCATGGCCTGGT
LOC_Os11g09329
Os.16476.1.A1_at--235--5011Chr11:4992997..4993021 (25 bp)
GCATGGCCTGGTTTGTAAATTCACA
LOC_Os11g09329
Os.16476.1.A1_at--314--9391Chr11:4992878..4992902 (25 bp)
TCGTACTCACAATATGTTCTGCTCC
LOC_Os11g09329
Os.16476.1.A1_at--725--9312Chr01:7972295..7972326 (24 bp)
TCCCTCTGTTCCTCTATAGATGACA
NONE
Os.16476.1.A1_at--472--8951Chr11:4992836..4992860 (25 bp)
TGACACCCATTAGCCAAGCAAACTT
LOC_Os11g09329
Os.16476.1.A1_at--174--3131Chr11:4992783..4992807 (25 bp)
AATTTCGAAAATGCTCCTGGATTAA
LOC_Os11g09329
Os.16476.1.A1_at--1106--9831Chr11:4992761..4992785 (25 bp)
TAAAGTATCTCTATTCTGCTGAAAT
LOC_Os11g09329
Os.16476.1.A1_at--607--10691Chr11:4992704..4992728 (25 bp)
TTGCTTCTGGACGATTTGTGTGCCT
LOC_Os11g09329
Os.16476.1.A1_at--1019--10531Chr11:4992585..4992609 (25 bp)
TTCTTGTTTTTTCCTAGTCACTGAG
LOC_Os11g09329
Target Sequence 
TTGCTGTTTCTTTATGCCTTGCTTTGTTCTATTTTTCCCATTCTCTTTAGAATAACCTACTTTGGTTGGAACAAGCATGG
CCTGGTTTGTAAATTCACACTTGTGGGGGAAAAGTTTCAAACACATGTTCCTATCAGAAATACTGATCAGCCTACAACCA
CATTAAATGGCTAGGCATGTTTTAGGAGTGGAATCGTACTCACAATATGTTCTGCTCCCTCTGTTCCTCTATAGATGACA
CCCATTAGCCAAGCAAACTTCCCAAGGCTATAAAATGTTTCCTAGTTAAATTTCGAAAATGCTCCTGGATTAAAGTATCT
CTATTCTGCTGAAATTGTGCATCAGACAGCAGAAANCAGTGTNCANGTTGCTTCTGGACGATTTGTGTGCCTCCAANGCT
NCAACCNTNAGGACNTGCNGCTCAGCACAACTGGAGAGTANGGAAAGAAGGTTCACNGTGCATATAGGCTATCAGGCTNC
AGANCTTTCTTGTTTTTTCCTAGTCACTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16476.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis