Browse Element(s) Details


Os.20320.1.S1_at

Description gb:AK073816.1
DB_XREF= gi:32983839
TID=Os.20320.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20320 (NCBI UniGene Cluster)
UG_TITLE=Seed protein B32E mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067D16, full insert sequence.
FL= gb:AK073816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0932911/11VHS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09270OsAffx.30898.1.S1_at10/1111+4964702..4965853hypothetical protein
LOC_Os11g09280Os.10985.1.S1_at11/1111+4967059..4970854Protein disulfide-isomerase precursor, putative, expressed
LOC_Os11g09290NANA11+4972825..4975422retrotransposon protein, putative, unclassified
LOC_Os11g09300NANA11+4978545..4984107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g09310Os.17200.1.S1_at10/1111+4986813..4988731Zinc knuckle family protein, expressed
LOC_Os11g09329Os.20320.1.S1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09329Os.16476.1.A1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09350Os.8637.1.S1_at11/1111+5006220..5009423expressed protein
LOC_Os11g09360OsAffx.30899.1.S1_at11/1111+5022178..5023199F-box domain containing protein
LOC_Os11g09370Os.51921.1.S1_at11/1111+5023640..5025395histone deacetylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20320.1.S1_at--198--1691Chr11:4990012..4990036 (25 bp)
AGCCAAACAGAAGGCCTTTCGCTTA
LOC_Os11g09329
Os.20320.1.S1_at--211--891Chr11:4990001..4990025 (25 bp)
AGGCCTTTCGCTTAATCAGAGGAAT
LOC_Os11g09329
Os.20320.1.S1_at--358--8251Chr11:4989936..4989960 (25 bp)
GGCAGACCAAACCTGAAGATTCTCT
LOC_Os11g09329
Os.20320.1.S1_at--670--2911Chr11:4989907..4989931 (25 bp)
AAGGATCTTGTCGATTTCGCTAAGA
LOC_Os11g09329
Os.20320.1.S1_at--1019--9771Chr11:4989863..4989887 (25 bp)
TAAACCAGCCAACAGCCGCAGGACT
LOC_Os11g09329
Os.20320.1.S1_at--1159--951Chr11:4989844..4989868 (25 bp)
AGGACTCGCTGACCAATGGGTGCTA
LOC_Os11g09329
Os.20320.1.S1_at--632--5111Chr11:4989814..4989838 (25 bp)
GCACTTTGAGGAGTTGCCAAGCTAT
LOC_Os11g09329
Os.20320.1.S1_at--518--10871Chr11:4989789..4989813 (25 bp)
TTGGCTTTACAGGTTTAGCGGCTTT
LOC_Os11g09329
Os.20320.1.S1_at--355--5211Chr11:4989710..4989734 (25 bp)
GAATTACTTTGGCTGTGCAAGGTGT
LOC_Os11g09329
Os.20320.1.S1_at--193--5191Chr11:4989694..4989718 (25 bp)
GCAAGGTGTTATTGTGCATTCGACA
LOC_Os11g09329
Os.20320.1.S1_at--1132--7511Chr11:4989450..4989474 (25 bp)
GTGGAGAAACTGTAACATGGCCTTT
LOC_Os11g09329
Target Sequence 
AGCCAAACAGAAGGCCTTTCGCTTAATCAGAGGAATACCGAGAATGAGAGAGGTTCATCAGTTCCNACCGCATCACGGCA
GACCAAACCTGAAGATTCTCTTTTCAAGGATCTTGTCGATTTCGCTAAGAACAANCCGTCTTCTCCATCTAAACCAGCCA
ACAGCCGCAGGACTCGCTGACCAATGGGTGCTAGGGAAGCACTTTGAGGAGTTGCCAAGCTATTTGGCTTTACAGGTTTA
GCGGCTTTAGAGATGATATATACCATCAAATAAGAGTTTCAGTCTGGATTTCATTACCNTGGGAATTACTTTGGCTGTGC
AAGGTGTTATTGTGCATTCGACAGTTAGAATTCACAGATATCAGATACATTCAGTCATGATCATAATGGGNTGTGTGTTG
TGTAGTCAGGATGTTTTTTTTTTTGGAACCTTTGCCACATTTTTTTTNCCTTTTCCATTCATGCTCCTANTTTCCTTTGC
TGTATATATTACTCCATTTGNCAGCAATATTCATAGTTCAGGTTGCANTTNNNNNNNNNNNNNNNNNNNNNNNNNTTTTC
AGTGTGGAGAAACTGTAACATGGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis