Browse Element(s) Details


OsAffx.29738.2.S1_at

Description tigr:9637.m00445
TID=OsAffx.29738.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0689011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06850Os.53142.1.S1_at3/119+3283992..3284746transposon protein, putative, unclassified
LOC_Os09g06860NANA9+3286518..3287111transposon protein, putative, unclassified
LOC_Os09g06870Os.24831.1.S1_x_at9/119+3289248..3291963retrotransposon protein, putative, unclassified
LOC_Os09g06870Os.24831.3.S1_x_at9/119+3289248..3291963retrotransposon protein, putative, unclassified
LOC_Os09g06870Os.24831.3.S1_s_at5/119+3289248..3291963retrotransposon protein, putative, unclassified
LOC_Os09g06870Os.53142.1.S1_at3/119+3289248..3291963retrotransposon protein, putative, unclassified
LOC_Os09g06870Os.24831.4.S1_x_at1/119+3289248..3291963retrotransposon protein, putative, unclassified
LOC_Os09g06880NANA9+3296737..3300226retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06890OsAffx.29738.2.S1_at11/119+3302872..3306522BTB/POZ domain containing protein
LOC_Os09g06890Os.54718.1.S1_at4/119+3302872..3306522BTB/POZ domain containing protein
LOC_Os09g06890Os.57571.1.S2_at1/119+3302872..3306522BTB/POZ domain containing protein
LOC_Os09g06900NANA9+3317012..3320815transposon protein, putative, unclassified
LOC_Os09g06910Os.39427.1.A1_s_at11/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910Os.39427.1.A1_at11/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910OsAffx.11140.1.S1_at1/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910OsAffx.28025.4.S1_x_at1/119+3324212..3331210retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29738.2.S1_at--367--4331Chr09:3305945..3305969 (25 bp)
CCATCCCGTGGTTGAACCTCAATGG
LOC_Os09g06890
OsAffx.29738.2.S1_at--732--7491Chr09:3305952..3305976 (25 bp)
GTGGTTGAACCTCAATGGCCAGCTC
LOC_Os09g06890
OsAffx.29738.2.S1_at--468--10751Chr09:3305956..3305980 (25 bp)
TTGAACCTCAATGGCCAGCTCGGCG
LOC_Os09g06890
OsAffx.29738.2.S1_at--80--5751Chr09:3305998..3306022 (25 bp)
GACGGCTCGGACGTGCCGTTCTCTG
LOC_Os09g06890
OsAffx.29738.2.S1_at--523--9431Chr09:3306004..3306028 (25 bp)
TCGGACGTGCCGTTCTCTGTCGGCG
LOC_Os09g06890
OsAffx.29738.2.S1_at--546--1311Chr09:3306032..3306056 (25 bp)
AGATGTTCCACGCACACCATGCCGT
LOC_Os09g06890
OsAffx.29738.2.S1_at--146--8111Chr09:3306186..3306210 (25 bp)
GGACGCCTTGCTGTCGCCGACTAGA
LOC_Os09g06890
OsAffx.29738.2.S1_at--801--3631Chr09:3306192..3306216 (25 bp)
CTTGCTGTCGCCGACTAGAGGCGGT
LOC_Os09g06890
OsAffx.29738.2.S1_at--1088--2011Chr09:3306205..3306229 (25 bp)
ACTAGAGGCGGTGCCAGCTCGACGT
LOC_Os09g06890
OsAffx.29738.2.S1_at--719--3751Chr09:3306259..3306283 (25 bp)
CTCATGGCGGTGGACATGTACGCAT
LOC_Os09g06890
OsAffx.29738.2.S1_at--589--8511Chr09:3306269..3306293 (25 bp)
TGGACATGTACGCATTGAAGAGGTT
LOC_Os09g06890
Target Sequence 
CCATCCCGTGGTTGAACCTCAATGGCCAGCTCGGCGACATCGTGGACCGTGCCGACGGCTCGGACGTGCCGTTCTCTGTC
GGCGGCGAGATGTTCCACGCACACCATGCCGTGCTCGCCGCGCGCTCGCCGGTGTTCAAGACGGAGCTCCTCGGGTCCAT
GGCGGAGTCCGCCATGCCGTGCGTCACCCTGCACAACATCGACCCGGCCACGTTCAAAGCTCTACTACACTTCGTGTACA
TGGACGCCTTGCTGTCGCCGACTAGAGGCGGTGCCAGCTCGACGTCGACGACAACCGGATTTTTCAAGAGCTTGCTCATG
GCGGTGGACATGTACGCATTGAAGAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29738.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis