Browse Element(s) Details


Os.55510.1.S1_at

Description gb:AK108228.1
DB_XREF= gi:32993437
TID=Os.55510.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F09, full insert sequence.
FL= gb:AK108228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0695010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06910Os.39427.1.A1_s_at11/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910Os.39427.1.A1_at11/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910OsAffx.11140.1.S1_at1/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06910OsAffx.28025.4.S1_x_at1/119+3324212..3331210retrotransposon protein, putative, unclassified
LOC_Os09g06920OsAffx.11140.1.S1_at2/119+3334140..3340666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g06930OsAffx.6190.1.S1_at11/119+3342946..3343222hypothetical protein
LOC_Os09g06940NANA9+3347092..3347772hypothetical protein
LOC_Os09g06950Os.55510.1.S1_at10/119+3354810..3355603expressed protein
LOC_Os09g06960NANA9+3361805..3362047retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06970Os.9241.1.S1_a_at11/119+3368503..3375004Transport protein particle component, Bet3 containing protein, expressed
LOC_Os09g06970OsAffx.6191.1.S1_at10/119+3368503..3375004Transport protein particle component, Bet3 containing protein, expressed
LOC_Os09g06970Os.34129.1.S1_x_at2/119+3368503..3375004Transport protein particle component, Bet3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55510.1.S1_at--975--1651NONE
AGCGCCCTTAAGTACTGCCGGATCT
NONE
Os.55510.1.S1_at--996--3231Chr09:3355104..3355128 (25 bp)
CAAGCCCTACCACCGGATCTAGAAG
LOC_Os09g06950
Os.55510.1.S1_at--179--471Chr09:3355195..3355219 (25 bp)
ATCTCGAGCTCCTGGGCATCAGATC
LOC_Os09g06950
Os.55510.1.S1_at--915--391Chr09:3355212..3355236 (25 bp)
ATCAGATCCGGTCTCTATGTGGTTG
LOC_Os09g06950
Os.55510.1.S1_at--1046--571Chr09:3355349..3355373 (25 bp)
ATCCACGTAGTGCTGACCGCCGTTT
LOC_Os09g06950
Os.55510.1.S1_at--4--6233Chr09:3355409..3355433 (25 bp)
GAGGCCCATTGTTCTGTTCATGATG
LOC_Os09g06950
Os.55510.1.S1_at--36--711Chr09:3355428..3355452 (25 bp)
ATGATGGACGATTATGCTTGCCTTC
LOC_Os09g06950
Os.55510.1.S1_at--1067--631Chr09:3355441..3355465 (25 bp)
ATGCTTGCCTTCCTTGTGTTGTTCA
LOC_Os09g06950
Os.55510.1.S1_at--940--7415Chr09:3355456..3355480 (25 bp)
GTGTTGTTCATGTTGCTACTGTGAT
LOC_Os09g06950
Os.55510.1.S1_at--606--6291Chr09:3355482..3355506 (25 bp)
GATGATTCTGCTTCTTGTTGCGATT
LOC_Os09g06950
Os.55510.1.S1_at--978--6671Chr09:3355498..3355522 (25 bp)
GTTGCGATTGTGATTCCTGTGATTT
LOC_Os09g06950
Target Sequence 
AGCGCCCTTAAGTACTGCCGGATCTACAAGCCCTACCACCGGATCTAGAAGCCCCGGAGCTCCGGTCGCTGCCTCCTTCA
CCCTCCGCCCCAGGTCGCCGGTCGCCTCATCTCCACCATCTCGAGCTCCTGGGCATCAGATCCGGTCTCTATGTGGTTGG
GGACCACCGGATCTGGTCACCCCCATGCTCCGGCCACCGCCTTCTTCGTCTACTCCGCCGCCATCGTCTCTTCGTCTACT
CCGCCACCGAGCTCGGGTCGCCGTCGCCTCCATCCACGTAGTGCTGACCGCCGTTTCTTCGTCTTCTCCGCGCCCAAGCT
GATGGCAGGTGGAGGCCCATTGTTCTGTTCATGATGGACGATTATGCTTGCCTTCCTTGTGTTGTTCATGTTGCTACTGT
GATTGATGATTCTGCTTCTTGTTGCGATTGTGATTCCTGTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis