Browse Element(s) Details


Os.9241.1.S1_a_at

Description gb:AK072551.1
DB_XREF= gi:32982574
TID=Os.9241.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131N19, full insert sequence.
FL= gb:AK072551.1 gb:AK099703.1 gb:AK061918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0697011/11Transport protein particle component, Bet3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06940NANA9+3347092..3347772hypothetical protein
LOC_Os09g06950Os.55510.1.S1_at10/119+3354810..3355603expressed protein
LOC_Os09g06960NANA9+3361805..3362047retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g06970Os.9241.1.S1_a_at11/119+3368503..3375004Transport protein particle component, Bet3 containing protein, expressed
LOC_Os09g06970OsAffx.6191.1.S1_at10/119+3368503..3375004Transport protein particle component, Bet3 containing protein, expressed
LOC_Os09g06970Os.34129.1.S1_x_at2/119+3368503..3375004Transport protein particle component, Bet3 containing protein, expressed
LOC_Os09g06979OsAffx.30451.1.S1_s_at8/119+3384083..3385701NA
LOC_Os09g06979OsAffx.30451.3.S1_x_at2/119+3384083..3385701NA
LOC_Os09g06979OsAffx.12135.1.S1_at1/119+3384083..3385701NA
LOC_Os09g06979OsAffx.28646.1.S1_at1/119+3384083..3385701NA
LOC_Os09g06979OsAffx.12135.1.S1_x_at1/119+3384083..3385701NA
LOC_Os09g06979OsAffx.13030.1.S1_x_at1/119+3384083..3385701NA
LOC_Os09g06990NANA9+3386610..3386951retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07000OsAffx.31811.3.S1_x_at7/119+3388902..3396159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07000OsAffx.31811.5.S1_at6/119+3388902..3396159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07000Os.45173.1.S1_x_at2/119+3388902..3396159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07000OsAffx.31811.1.S1_at2/119+3388902..3396159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07000OsAffx.28492.1.S1_at1/119+3388902..3396159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07010Os.23189.1.S1_at1/119+3398181..3402109retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9241.1.S1_a_at--721--4471Chr09:3374634..3374658 (25 bp)
GCCTGGGAAATACGCCTTGTAGCTG
LOC_Os09g06970
Os.9241.1.S1_a_at--132--2251Chr09:3374641..3374665 (25 bp)
AAATACGCCTTGTAGCTGCTCCTTT
LOC_Os09g06970
Os.9241.1.S1_a_at--226--10591Chr09:3374670..3374694 (25 bp)
TTCTCTTTGTTCTTAGAGGCACCTC
LOC_Os09g06970
Os.9241.1.S1_a_at--232--3671Chr09:3374681..3374705 (25 bp)
CTTAGAGGCACCTCTTTACTTACTG
LOC_Os09g06970
Os.9241.1.S1_a_at--79--5691Chr09:3374705..3374729 (25 bp)
GACTTCATCATACCTTCCTTTGTGC
LOC_Os09g06970
Os.9241.1.S1_a_at--938--1731Chr09:3374716..3374740 (25 bp)
ACCTTCCTTTGTGCACATCTTAAGA
LOC_Os09g06970
Os.9241.1.S1_a_at--46--7351Chr09:3374726..3374750 (25 bp)
GTGCACATCTTAAGATTGGGTGTAA
LOC_Os09g06970
Os.9241.1.S1_a_at--328--7451Chr09:3374745..3374769 (25 bp)
GTGTAATTTTGTGATTCGTGTGAAC
LOC_Os09g06970
Os.9241.1.S1_a_at--504--3811Chr09:3374794..3374818 (25 bp)
CTCCTGAGATACTGGCTAGAGCCAT
LOC_Os09g06970
Os.9241.1.S1_a_at--464--431Chr09:3374852..3374876 (25 bp)
ATCTTGTATGTGATGCCCGCGCACA
LOC_Os09g06970
Os.9241.1.S1_a_at--1088--8851Chr09:3374862..3374886 (25 bp)
TGATGCCCGCGCACAGTCACGATTT
LOC_Os09g06970
Target Sequence 
GCCTGGGAAATACGCCTTGTAGCTGCTCCTTTTTCTTTCTCTTTGTTCTTAGAGGCACCTCTTTACTTACTGACTTCATC
ATACCTTCCTTTGTGCACATCTTAAGATTGGGTGTAATTTTGTGATTCGTGTGAACAAGAGAAGACAAAATGTAATATTT
CTCCTGAGATACTGGCTAGAGCCATGTAATTTTGTTGTCTAGCAGTGGAGAATGTTTTATCTTGTATGTGATGCCCGCGC
ACAGTCACGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9241.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis