Browse Element(s) Details


OsAffx.31811.1.S1_at

Description tigr:9638.m02020
TID=OsAffx.31811.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2415011/11Zinc knuckle family protein, expressed
LOC_Os11g187002/11Zinc knuckle family protein
LOC_Os09g070002/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24100OsAffx.20420.1.S1_at11/1110+12017946..12021917hypothetical protein
LOC_Os10g24100OsAffx.20423.2.S1_x_at1/1110+12017946..12021917hypothetical protein
LOC_Os10g24110Os.31497.2.S1_x_at1/1110+12024225..12026729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24120Os.51501.1.S2_x_at2/1110+12027371..12031452hypothetical protein
LOC_Os10g24140NANA10+12033237..12033626hypothetical protein
LOC_Os10g24150OsAffx.31811.1.S1_at11/1110+12038029..12042499Zinc knuckle family protein, expressed
LOC_Os10g24150OsAffx.31811.3.S1_x_at3/1110+12038029..12042499Zinc knuckle family protein, expressed
LOC_Os10g24160Os.45977.1.S1_at5/1110+12046754..12049728retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24170Os.45957.1.S1_at1/1110+12050363..12052178retrotransposon protein, putative, unclassified, expressed
LOC_Os10g24180NANA10+12055688..12056218hypothetical protein
LOC_Os10g24190OsAffx.8201.1.S1_x_at1/1110+12057819..12063385retrotransposon protein, putative, unclassified
LOC_Os10g24190OsAffx.22699.1.S1_x_at1/1110+12057819..12063385retrotransposon protein, putative, unclassified
LOC_Os10g24200NANA10+12063911..12067074hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31811.1.S1_at--425--2293Chr07:11303356..11303380 (25 bp)
AAAGGCTTCGGTAAGACCGCTCGAT
NONE
OsAffx.31811.1.S1_at--1066--5812Chr10:12038964..12038988 (25 bp)
GACCGCTCGATTTGCAATCAAGCTC
LOC_Os10g24150
OsAffx.31811.1.S1_at--976--3076Chr11:10570480..10570504 (25 bp)
AATCAAGCTCATCTATCACCATGCC
LOC_Os11g18700
OsAffx.31811.1.S1_at--322--8011Chr10:12038915..12038939 (25 bp)
GGAGGCTCTAGGTGGATACCCCGAA
LOC_Os10g24150
OsAffx.31811.1.S1_at--748--311Chr10:12038900..12038924 (25 bp)
ATACCCCGAAGACTCCAGGAAGATT
LOC_Os10g24150
OsAffx.31811.1.S1_at--266--7831Chr10:12038871..12038895 (25 bp)
GGTCACCCGAAGGATCAAGGCCGAA
LOC_Os10g24150
OsAffx.31811.1.S1_at--1147--4774Chr11:10570584..10570608 (25 bp)
GCTCCAAGCTCACAAGAACATGCAT
LOC_Os11g18700
OsAffx.31811.1.S1_at--270--2911Chr10:12038815..12038839 (25 bp)
AAGGTTATCCTTCTGTGCAAGAATC
LOC_Os10g24150
OsAffx.31811.1.S1_at--1122--5831Chr10:12038428..12038452 (25 bp)
GACCAAGGTGGACTACTCGATCAAC
LOC_Os10g24150
OsAffx.31811.1.S1_at--362--2632Chr05:6505345..6505369 (25 bp)
AACCTGCCGCAATTGACTATGAAGA
NONE
OsAffx.31811.1.S1_at--302--7431Chr10:12038114..12038138 (25 bp)
GTGTAAATGCTAAACCAGATCGGGT
LOC_Os10g24150
Target Sequence 
AAAGGCTTCGGTAAGACCGCTCGATTTGCAATCAAGCTCATCTATCACCATGCCATCGAGCCCGGAGGCTCTAGGTGGAT
ACCCCGAAGACTCCAGGAAGATTCCTTGGTCACCCGAAGGATCAAGGCCGAAGGCTCCAAGCTCACAAGAACATGCATAC
TTAAAGGTTATCCTTCTGTGCAAGAATCACGGGTGAGACCACAAGAAGTCCATGATGACCAAGGTGGACTACTCGATCAA
CCTCAATCAACTCAAGTCAACCTGCCGCAATTGACTATGAAGAACATGAAGAACATGCTTCCGAAGGAAGATGGTGTAAA
TGCTAAACCAGATCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis