Browse Element(s) Details


OsAffx.20420.1.S1_at

Description tigr:9638.m02015
TID=OsAffx.20420.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2410011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24060OsAffx.20421.1.S1_at11/1110+11993380..11994214hypothetical protein
LOC_Os10g24060OsAffx.15574.1.S1_at1/1110+11993380..11994214hypothetical protein
LOC_Os10g24070Os.14200.2.S1_x_at11/1110+11996060..12005435expressed protein
LOC_Os10g24070Os.14200.1.S1_at10/1110+11996060..12005435expressed protein
LOC_Os10g24080OsAffx.6747.2.S1_x_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.2.S1_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.1.S1_x_at2/1110+12006370..12007211hypothetical protein
LOC_Os10g24090NANA10+12011279..12011986hypothetical protein
LOC_Os10g24100OsAffx.20420.1.S1_at11/1110+12017946..12021917hypothetical protein
LOC_Os10g24100OsAffx.20423.2.S1_x_at1/1110+12017946..12021917hypothetical protein
LOC_Os10g24110Os.31497.2.S1_x_at1/1110+12024225..12026729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24120Os.51501.1.S2_x_at2/1110+12027371..12031452hypothetical protein
LOC_Os10g24140NANA10+12033237..12033626hypothetical protein
LOC_Os10g24150OsAffx.31811.1.S1_at11/1110+12038029..12042499Zinc knuckle family protein, expressed
LOC_Os10g24150OsAffx.31811.3.S1_x_at3/1110+12038029..12042499Zinc knuckle family protein, expressed
LOC_Os10g24160Os.45977.1.S1_at5/1110+12046754..12049728retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20420.1.S1_at--364--391Chr10:12020703..12020727 (25 bp)
ATCACCAAGTGATATCAATCTGAAC
LOC_Os10g24100
OsAffx.20420.1.S1_at--1077--351Chr10:12020677..12020701 (25 bp)
ATAATCCTTGTATCTACCTTGGAAG
LOC_Os10g24100
OsAffx.20420.1.S1_at--560--7691Chr10:12020641..12020665 (25 bp)
GGGTATACTGCGCATCAATTGATCT
LOC_Os10g24100
OsAffx.20420.1.S1_at--827--9611Chr10:12020598..12020622 (25 bp)
TCAGGTTTGGCAGCTGCACGAACTG
LOC_Os10g24100
OsAffx.20420.1.S1_at--342--9031Chr10:12020584..12020608 (25 bp)
TGCACGAACTGCATGGTGGTGGTTA
LOC_Os10g24100
OsAffx.20420.1.S1_at--417--6291Chr10:12020547..12020571 (25 bp)
GATGTTGATACACGATGTCAGTCTT
LOC_Os10g24100
OsAffx.20420.1.S1_at--872--2171Chr10:12020538..12020562 (25 bp)
ACACGATGTCAGTCTTGACCAGATC
LOC_Os10g24100
OsAffx.20420.1.S1_at--721--4711Chr10:12020486..12020510 (25 bp)
GCTGTTAGGCCATGGATCGAACATG
LOC_Os10g24100
OsAffx.20420.1.S1_at--979--6491Chr10:12020462..12020486 (25 bp)
GATATGTATTGCGATGACGCCAAGA
LOC_Os10g24100
OsAffx.20420.1.S1_at--335--3191Chr10:12020420..12020444 (25 bp)
CAAGAGGAATCTACTGGTTGGGACT
LOC_Os10g24100
OsAffx.20420.1.S1_at--638--6291Chr10:12020390..12020414 (25 bp)
GATGATAGCATCCTTTACACTGAAG
LOC_Os10g24100
Target Sequence 
ATCACCAAGTGATATCAATCTGAACAATAATCCTTGTATCTACCTTGGAAGAACAAAGAATGGGGTATACTGCGCATCAA
TTGATCTCAAACAACATCAGCGTCTTCAGGTTTGGCAGCTGCACGAACTGCATGGTGGTGGTTACCACTTGGAGTGGATG
TTGATACACGATGTCAGTCTTGACCAGATCATGGCAGATTTCCGCTGGAATCCTGAAGCTGTTAGGCCATGGATCGAACA
TGATATGTATTGCGATGACGCCAAGAATGATAGAGAAATATCACAAGAGGAATCTACTGGTTGGGACTCTGAGGATGATA
GCATCCTTTACACTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis