Browse Element(s) Details


Os.6102.1.S1_s_at

Description gb:AU166391
DB_XREF= gi:12404790
DB_XREF=AU166391
CLONE=C11835
TID=Os.6102.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.6102 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566527.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4050011/11phosphatidic acid phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40480NANA6+24113441..24119596retrotransposon protein, putative, unclassified
LOC_Os06g40490Os.50415.1.S1_at11/116+24126170..24129371Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g40500Os.53183.1.S1_at11/116+24138353..24141393phosphatidic acid phosphatase, putative, expressed
LOC_Os06g40500Os.6102.1.S1_s_at11/116+24138353..24141393phosphatidic acid phosphatase, putative, expressed
LOC_Os06g40510OsAffx.15861.1.S1_at9/116+24141509..24146314CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g40510Os.38109.1.S1_at2/116+24141509..24146314CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g40520Os.39427.1.A1_s_at11/116+24149158..24153305expressed protein
LOC_Os06g40520Os.39427.1.A1_at11/116+24149158..24153305expressed protein
LOC_Os06g40520OsAffx.28025.4.S1_x_at1/116+24149158..24153305expressed protein
LOC_Os06g40530NANA6+24156238..24160020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40540Os.40360.1.S1_x_at1/116+24164118..24166511hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6102.1.S1_s_at--1116--9031Chr06:24141192..24141216 (25 bp)
TGCAGCTGCCACAAGGCTCTCTTGT
LOC_Os06g40500
Os.6102.1.S1_s_at--64--2951Chr06:24141204..24141228 (25 bp)
AAGGCTCTCTTGTCACAGTAGCTTT
LOC_Os06g40500
Os.6102.1.S1_s_at--245--9531Chr06:24141209..24141233 (25 bp)
TCTCTTGTCACAGTAGCTTTGCATT
LOC_Os06g40500
Os.6102.1.S1_s_at--666--9991Chr06:24141222..24141246 (25 bp)
TAGCTTTGCATTTTAGGCCCAGCCA
LOC_Os06g40500
Os.6102.1.S1_s_at--947--10091Chr06:24141235..24141259 (25 bp)
TAGGCCCAGCCATTAATGGCCAATG
LOC_Os06g40500
Os.6102.1.S1_s_at--438--8451Chr06:24141251..24141275 (25 bp)
TGGCCAATGCAGTTGGTTGGGCATC
LOC_Os06g40500
Os.6102.1.S1_s_at--491--6634Chr11:15411802..15411826 (25 bp)
GTTGGGCATCAAACCATGTCATTTT
NONE
Os.6102.1.S1_s_at--686--9373Chr11:15411837..15411864 (25 bp)
TCGAGATTAAATGCTACCTACTGAT
NONE
Os.6102.1.S1_s_at--1084--613Chr11:15411853..15411874 (22 bp)
ATGCTACCTACTGATGTGTAATTGT
NONE
Os.6102.1.S1_s_at--462--8751Chr06:24141333..24141357 (25 bp)
TGTACAAACACTATCCATTCCATCT
LOC_Os06g40500
Os.6102.1.S1_s_at--160--2191Chr06:24141340..24141364 (25 bp)
ACACTATCCATTCCATCTGAGCTTA
LOC_Os06g40500
Target Sequence 
TGCAGCTGCCACAAGGCTCTCTTGTCACAGTAGCTTTGCATTTTAGGCCCAGCCATTAATGGCCAATGCAGTTGGTTGGG
CATCAAACCATGTCATTTTTTTGATGTAATCGAGATTAAATGCTACCTACTGATGTGTAATTGTACAAACACTATCCATT
CCATCTGAGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6102.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis