Browse Element(s) Details


Os.38109.1.S1_at

Description gb:AK067957.1
DB_XREF= gi:32977975
TID=Os.38109.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0063G05.27 (OSJNBb0063G05.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128M05, full insert sequence.
FL= gb:AK067957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g424002/11hypothetical protein
LOC_Os06g405102/11CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g018201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42364OsAffx.22848.4.S1_x_at3/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42364OsAffx.22848.4.S1_at2/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42390Os.50990.1.S1_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42390OsAffx.18608.1.S1_x_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42400OsAffx.30753.1.S1_at11/1110+22490090..22494225hypothetical protein
LOC_Os10g42400Os.38109.1.S1_at2/1110+22490090..22494225hypothetical protein
LOC_Os10g42404NANA10+22495316..22495540hypothetical protein
LOC_Os10g42410Os.7002.1.S1_at11/1110+22499662..22501684expressed protein
LOC_Os10g42420Os.4114.1.S1_at11/1110+22506996..22511053GTPase activating protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38109.1.S1_at--295--10731Chr01:27713344..27713368 (25 bp)
TTGCTTCCATTTATGATGCTCTGCC
NONE
Os.38109.1.S1_at--828--4811Chr01:27713327..27713351 (25 bp)
GCTCTGCCTCATCCTTATTTGATAT
NONE
Os.38109.1.S1_at--1105--5091Chr01:27713293..27713317 (25 bp)
GCAAAGGTTCTTTCGTGGAGTCAAA
NONE
Os.38109.1.S1_at--239--51Chr01:27713197..27713221 (25 bp)
ATTGTCGCATTGCATTCAGTCCTGG
NONE
Os.38109.1.S1_at--853--1131Chr01:27713084..27713204 (25 bp)
AGTCCTGGCGGCTTTCAGCTTAAAT
NONE
Os.38109.1.S1_at--158--5671Chr01:27713060..27713079 (20 bp)
GACATGTTTCTTGTCTTGGTTACAA
NONE
Os.38109.1.S1_at--530--671Chr01:27713023..27713047 (25 bp)
ATGACAGCTTTCACATTTTTGAGAG
NONE
Os.38109.1.S1_at--766--4092Chr02:21923521..21923545 (25 bp)
CGAAGCAGACCTTTGGCGGTTGGCT
NONE
Os.38109.1.S1_at--748--9435Chr02:11746903..11746927 (25 bp)
TCGGGTGGAAGGTCGCCACATTCGT
NONE
Os.38109.1.S1_at--657--8774Chr08:5696585..5696609 (25 bp)
TGTTTTTGATTTTTCGGCCCGCTCT
NONE
Os.38109.1.S1_at--285--3938Chr08:488082..488103 (22 bp)
CGGCCCGCTCTGTAAATACTTTATT
LOC_Os08g01820
Target Sequence 
TTGCTTCCATTTATGATGCTCTGCCTCATCCTTATTTGATATCCACTTGTTGCAAAGGTTCTTTCGTGGAGTCAAATTTG
AATCCATGCTGCAAATTCTACATGCCTAAACCAGTAAACCGGGAATAGTTAAGTGCTCCTTCAGGACATTGTCGCATTGC
ATTCAGTCCTGGCGGCTTTCAGCTTAAATATTTGACATGTTTCTTGTCTTGGTTACAATCTTCATGACAGCTTTCACATT
TTTGAGAGCTGCCTCATTATTTCTCAATACCAACATTCTGTTTGGCGTGGACGATTTGGAAAGAAAGAAACAATCGGGTC
TTCAACCAAAAGAGTAGGACATGGGCGGAAATTGCTAGGGCCATGACGGGCGAAGCAGACCTTTGGCGGTTGGCTAGAGC
CGCGATACCGGCCATGGCGACCCCTATGTCGGGTGGAAGGTCGCCACATTCGTTGGGAGATTAGGCTTTTATTTTCTTCC
TCCTCCCCCCTCCTGTATCTTGTCCCCTTCGTGTTTTTGATTTTTCGGCCCGCTCTGTAAATACTTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis