Browse Element(s) Details


OsAffx.18608.1.S1_x_at

Description tigr:9638.m03878
TID=OsAffx.18608.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4239011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42340OsAffx.6945.1.S1_at11/1110+22459247..22463635expressed protein
LOC_Os10g42364OsAffx.22848.4.S1_x_at3/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42364OsAffx.22848.4.S1_at2/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42390Os.50990.1.S1_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42390OsAffx.18608.1.S1_x_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42400OsAffx.30753.1.S1_at11/1110+22490090..22494225hypothetical protein
LOC_Os10g42400Os.38109.1.S1_at2/1110+22490090..22494225hypothetical protein
LOC_Os10g42404NANA10+22495316..22495540hypothetical protein
LOC_Os10g42410Os.7002.1.S1_at11/1110+22499662..22501684expressed protein
LOC_Os10g42420Os.4114.1.S1_at11/1110+22506996..22511053GTPase activating protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18608.1.S1_x_at--450--4131Chr10:22488444..22488468 (25 bp)
CGCTTCGTCTTCTTCGAGTTCGAGG
LOC_Os10g42390
OsAffx.18608.1.S1_x_at--1073--10611Chr10:22488447..22488471 (25 bp)
TTCGTCTTCTTCGAGTTCGAGGCAA
LOC_Os10g42390
OsAffx.18608.1.S1_x_at--117--7151Chr10:22488450..22488474 (25 bp)
GTCTTCTTCGAGTTCGAGGCAATCC
LOC_Os10g42390
OsAffx.18608.1.S1_x_at--763--9031Chr10:22488457..22488481 (25 bp)
TCGAGTTCGAGGCAATCCTTCCCCA
LOC_Os10g42390
OsAffx.18608.1.S1_x_at--312--6071Chr10:22488459..22488483 (25 bp)
GAGTTCGAGGCAATCCTTCCCCACG
LOC_Os10g42390
OsAffx.18608.1.S1_x_at--8--8851Chr10:22488485..22488509 (25 bp)
TGCTCCCCGTTTTTATCCTCTTCGT
LOC_Os10g42390
OsAffx.18608.1.S1_x_at--591--7651Chr10:22488605..22488629 (25 bp)
GGGAGGATCATGACTCCTCCTCCGT
LOC_Os10g42390
OsAffx.18608.1.S1_x_at--422--6171Chr10:22488607..22488631 (25 bp)
GAGGATCATGACTCCTCCTCCGTCT
LOC_Os10g42390
OsAffx.18608.1.S1_x_at--1073--9651Chr10:22488643..22488667 (25 bp)
TCAGCCTCGCCGATTAATGCCCAGG
LOC_Os10g42390
OsAffx.18608.1.S1_x_at--557--6551Chr10:22488654..22488678 (25 bp)
GATTAATGCCCAGGCGCCGCGCAAG
LOC_Os10g42390
OsAffx.18608.1.S1_x_at--641--2151Chr10:22488827..22488851 (25 bp)
ACACGCCCTGCATTGACTCCTGGCT
LOC_Os10g42390
Target Sequence 
CGCTTCGTCTTCTTCGAGTTCGAGGCAATCCTTCCCCACGCTGCTCCCCGTTTTTATCCTCTTCGTCCTCCTCCTCTGCT
TCCTCTCCATCTTCCTCGTCCGCGACCTCCTCCACTTCCTCTCCCTCTGCCTCCGCCGCCGCCGCCTCCTCCTTCGCCAC
GGGGAGGATCATGACTCCTCCTCCGTCTCCATGCAGTCCTCAGCCTCGCCGATTAATGCCCAGGCGCCGCGCAAGCCGCC
GGGCTTGGACCCCGCCATCCTCGCGTCCTTCCCCACGCTGCGCTTCAAGGCCTCCGCCGCCGCGCCGGAGTGCGCCGTGT
GCCTCTCCGACTTCGCCGCCGGCGACGCCCTCCGCCTGCTCACCGTCTGCCGCCACGCCTTCCACACGCCCTGCATTGAC
TCCTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18608.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis