Browse Element(s) Details


OsAffx.6945.1.S1_at

Description tigr:9638.m03873
TID=OsAffx.6945.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4234011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42280Os.46585.1.S1_at11/1110+22436642..22437730Bet v I allergen family protein, putative, expressed
LOC_Os10g42299Os.2759.1.S1_s_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42299Os.12162.1.S1_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42320Os.12732.2.S1_x_at11/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42320Os.12732.1.S1_a_at11/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42320Os.12732.1.S1_at10/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42340OsAffx.6945.1.S1_at11/1110+22459247..22463635expressed protein
LOC_Os10g42364OsAffx.22848.4.S1_x_at3/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42364OsAffx.22848.4.S1_at2/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42390Os.50990.1.S1_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42390OsAffx.18608.1.S1_x_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6945.1.S1_at--1052--5231Chr10:22460169..22460582 (25 bp)
GAATCACAAGGTTTTTGTACCTCTT
LOC_Os10g42340
OsAffx.6945.1.S1_at--364--3272Chr12:10135614..10135633 (20 bp)
CACAAGGTTTTTGTACCTCTTGGCG
NONE
OsAffx.6945.1.S1_at--555--6712Chr12:10135615..10136037 (25 bp)
GTTTTTGTACCTCTTGGCGTTCAAG
NONE
OsAffx.6945.1.S1_at--969--10231Chr10:22460156..22460180 (25 bp)
TTTGTACCTCTTGGCGTTCAAGGCG
LOC_Os10g42340
OsAffx.6945.1.S1_at--1106--591Chr10:22460117..22460141 (25 bp)
ATGCCGATGCAGGAGTCCGCGACTC
LOC_Os10g42340
OsAffx.6945.1.S1_at--673--5011Chr10:22460109..22460133 (25 bp)
GCAGGAGTCCGCGACTCATCAGCGT
LOC_Os10g42340
OsAffx.6945.1.S1_at--393--5711Chr10:22460097..22460121 (25 bp)
GACTCATCAGCGTCGCAGATCGGCG
LOC_Os10g42340
OsAffx.6945.1.S1_at--701--491Chr10:22460079..22460103 (25 bp)
ATCGGCGAGGCAAGGGATGGAGTCC
LOC_Os10g42340
OsAffx.6945.1.S1_at--1147--7991Chr10:22460065..22460089 (25 bp)
GGATGGAGTCCTGGCGGTGCGTCGG
LOC_Os10g42340
OsAffx.6945.1.S1_at--419--5892Chr12:10135677..10135696 (20 bp)
GAGCGGATCGGCGAGGCTTGTCGAT
NONE
OsAffx.6945.1.S1_at--179--4071Chr10:22460027..22460051 (25 bp)
CGAGGCTTGTCGATGGAGTTATGGC
LOC_Os10g42340
Target Sequence 
GAATCACAAGGTTTTTGTACCTCTTGGCGTTCAAGGCGGAGGCGGTGGCAGCATGCCGATGCAGGAGTCCGCGACTCATC
AGCGTCGCAGATCGGCGAGGCAAGGGATGGAGTCCTGGCGGTGCGTCGGTGGAGCGGATCGGCGAGGCTTGTCGATGGAG
TTATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis