Browse Element(s) Details


Os.12732.2.S1_x_at

Description gb:AK101216.1
DB_XREF= gi:32986425
TID=Os.12732.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12732 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0003O19.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031B21, full insert sequence.
FL= gb:AK060642.1 gb:AK101216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4232011/11NMD3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42260OsAffx.20125.1.S1_at11/1110+22427620..22428470hypothetical protein
LOC_Os10g42270OsAffx.7899.1.S1_at10/1110+22429235..22431421hypothetical protein
LOC_Os10g42280Os.46585.1.S1_at11/1110+22436642..22437730Bet v I allergen family protein, putative, expressed
LOC_Os10g42299Os.2759.1.S1_s_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42299Os.12162.1.S1_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42320Os.12732.2.S1_x_at11/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42320Os.12732.1.S1_a_at11/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42320Os.12732.1.S1_at10/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42340OsAffx.6945.1.S1_at11/1110+22459247..22463635expressed protein
LOC_Os10g42364OsAffx.22848.4.S1_x_at3/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42364OsAffx.22848.4.S1_at2/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000184biological_processmRNA catabolism, nonsense-mediated decay
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12732.2.S1_x_at--970--6071Chr10:22453238..22453262 (25 bp)
GAGTTTCTCAGGGACTTGGAGCACA
LOC_Os10g42320
Os.12732.2.S1_x_at--511--5711Chr10:22453172..22453196 (25 bp)
GACTACAGGTCGGAGATGGCATCTA
LOC_Os10g42320
Os.12732.2.S1_x_at--763--731Chr10:22453135..22453159 (25 bp)
ATGTTCCCACTGTGCCGATTGAGGA
LOC_Os10g42320
Os.12732.2.S1_x_at--510--7611Chr10:22453060..22453084 (25 bp)
GGGAAGGCAACCAACATGCTGTTAT
LOC_Os10g42320
Os.12732.2.S1_x_at--293--3111Chr10:22453022..22453046 (25 bp)
AATATGTTTACCTGTGCTGTGCTTC
LOC_Os10g42320
Os.12732.2.S1_x_at--107--7911Chr10:22452983..22453007 (25 bp)
GGTTGCTGCCAACCGCAGATCATAG
LOC_Os10g42320
Os.12732.2.S1_x_at--79--5471Chr10:22452954..22452978 (25 bp)
GAACTGCATCTGTTTAATCCGTATA
LOC_Os10g42320
Os.12732.2.S1_x_at--1130--8791Chr10:22452924..22452948 (25 bp)
TGTTCTCCCCTTTACTTCTATAAGT
LOC_Os10g42320
Os.12732.2.S1_x_at--420--3271Chr10:22452874..22452898 (25 bp)
CAACTTTTGCTGTTTCTCATGATAG
LOC_Os10g42320
Os.12732.2.S1_x_at--111--6651Chr10:22452847..22452871 (25 bp)
GTTGTATCACCTTATCCTGTATCTG
LOC_Os10g42320
Os.12732.2.S1_x_at--230--6911Chr10:22452829..22452853 (25 bp)
GTATCTGGTGTTGCAGCTTGGCTTA
LOC_Os10g42320
Target Sequence 
GAGTTTCTCAGGGACTTGGAGCACAACTCTGATATTAGATTCCAGATTGATCTATACAAGGATGAGGACTACAGGTCGGA
GATGGCATCTACTATTGGTGATGATGTTCCCACTGTGCCGATTGAGGAACTAATTGAGGACCTAAGTCTTGGTGATGATG
AGGAGGAGGATGAAGGTGGGGAAGGCAACCAACATGCTGTTATGGTGGGATGAGTTAATATGTTTACCTGTGCTGTGCTT
CTGCCTTCTGGTGATGGTTGCTGCCAACCGCAGATCATAGGTCTGAACTGCATCTGTTTAATCCGTATAAGTTTTGTTCT
CCCCTTTACTTCTATAAGTTATAAGTTTTGTTGCTAAATTGTTTCAACTTTTGCTGTTTCTCATGATAGATGTTGTATCA
CCTTATCCTGTATCTGGTGTTGCAGCTTGGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12732.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis