Browse Element(s) Details


OsAffx.7899.1.S1_at

Description tigr:9638.m03866
TID=OsAffx.7899.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4227010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42210Os.2764.1.S1_s_at11/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42210Os.2764.2.S1_x_at7/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42220Os.47000.1.S1_x_at10/1110+22407927..224104303-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42230Os.55585.1.S1_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42230Os.2750.2.S1_a_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42234NANA10+22417063..22417866NA
LOC_Os10g42240Os.7866.1.S1_at11/1110+22420567..22423416carbohydrate kinase, putative, expressed
LOC_Os10g42250Os.20189.1.S1_at10/1110+22424448..22426914expressed protein
LOC_Os10g42260OsAffx.20125.1.S1_at11/1110+22427620..22428470hypothetical protein
LOC_Os10g42270OsAffx.7899.1.S1_at10/1110+22429235..22431421hypothetical protein
LOC_Os10g42280Os.46585.1.S1_at11/1110+22436642..22437730Bet v I allergen family protein, putative, expressed
LOC_Os10g42299Os.2759.1.S1_s_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42299Os.12162.1.S1_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42320Os.12732.2.S1_x_at11/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42320Os.12732.1.S1_a_at11/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42320Os.12732.1.S1_at10/1110+22452239..22454692NMD3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7899.1.S1_at--51--3391Chr10:22431257..22431281 (25 bp)
CAGCGGAAACCGGACCAAGCGGGCT
LOC_Os10g42270
OsAffx.7899.1.S1_at--113--9111Chr10:22431222..22431246 (25 bp)
TGCTCGACATCGAACTCGACGGGAT
LOC_Os10g42270
OsAffx.7899.1.S1_at--46--511Chr10:22431199..22431223 (25 bp)
ATCGAGATGTGGACCCCGGGCCAGA
LOC_Os10g42270
OsAffx.7899.1.S1_at--390--4471Chr10:22431168..22431192 (25 bp)
GCCTCGACGAGGACTGCTGCATCCT
LOC_Os10g42270
OsAffx.7899.1.S1_at--133--5171Chr10:22430986..22431007 (22 bp)
GCAAGGTGGCGTGCCGTGACTACCC
LOC_Os10g42270
OsAffx.7899.1.S1_at--160--9171Chr10:22430945..22430969 (25 bp)
TGCGCCAAGTTTCCATTCGGCACTA
LOC_Os10g42270
OsAffx.7899.1.S1_at--689--5111Chr10:22430926..22430950 (25 bp)
GCACTACACCCCATGATGATCATTG
LOC_Os10g42270
OsAffx.7899.1.S1_at--1101--711NONE
ATGATCATTGCGAGCAGTGCTTCTG
NONE
OsAffx.7899.1.S1_at--265--1131Chr10:22429804..22429828 (25 bp)
AGTGCTTCTGCTACGTATGCGACGT
LOC_Os10g42270
OsAffx.7899.1.S1_at--795--9171Chr10:22429776..22429800 (25 bp)
TGCCCCATGTTCCTCATGGAAGGGA
LOC_Os10g42270
OsAffx.7899.1.S1_at--1155--2311Chr10:22429748..22429772 (25 bp)
AAAGGGCATTGCCATGCGTCGGACA
LOC_Os10g42270
Target Sequence 
CAGCGGAAACCGGACCAAGCGGGCTCCCCCCTCGCTGCTCGACATCGAACTCGACGGGATCGAGATGTGGACCCCGGGCC
AGAAGCGCCGCCTCGACGAGGACTGCTGCATCCTCTCCGCCGACCCGCTCTCCCCCGACGTCGTCGCTGCCACCGCCGCC
GCCGCCGCGAACGATGACGTCGCCGTCGTCGCCGAGCGCGGCAAGGTGGCGTGCCGTGACTACCCCCATCCGAGATCTGC
CTGCGCCAAGTTTCCATTCGGCACTACACCCCATGATGATCATTGCGAGCAGTGCTTCTGCTACGTATGCGACGTGCCTG
CCCCATGTTCCTCATGGAAGGGAGAAAAAGGGCATTGCCATGCGTCGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis