Browse Element(s) Details


Os.47000.1.S1_x_at

Description gb:NM_197847.1
DB_XREF= gi:37537053
TID=Os.47000.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47000 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative enoyl-CoA-hydratase (OSJNBa0003O19.10), mRNA.
PROD=putative enoyl-CoA-hydratase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4222010/113-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os12g163504/113-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42202NANA10+22384303..22389591hypothetical protein
LOC_Os10g42210Os.2764.1.S1_s_at11/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42210Os.2764.2.S1_x_at7/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42220Os.47000.1.S1_x_at10/1110+22407927..224104303-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42230Os.55585.1.S1_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42230Os.2750.2.S1_a_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42234NANA10+22417063..22417866NA
LOC_Os10g42240Os.7866.1.S1_at11/1110+22420567..22423416carbohydrate kinase, putative, expressed
LOC_Os10g42250Os.20189.1.S1_at10/1110+22424448..22426914expressed protein
LOC_Os10g42260OsAffx.20125.1.S1_at11/1110+22427620..22428470hypothetical protein
LOC_Os10g42270OsAffx.7899.1.S1_at10/1110+22429235..22431421hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006574biological_processvaline catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0008152biological_processmetabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
GO:0003860molecular_function3-hydroxyisobutyryl-CoA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47000.1.S1_x_at--888--8432Chr12:9355435..9355459 (25 bp)
GGCCAAAGCAGTTGAATGCCCTCTC
LOC_Os12g16350
Os.47000.1.S1_x_at--1001--10352Chr12:9355605..9355629 (25 bp)
TTTTTGAGGTGCTTCACTGCTTATG
LOC_Os12g16350
Os.47000.1.S1_x_at--652--10712Chr12:9356153..9356177 (25 bp)
TTGCTGCAGTTGTCCGGTCTATAAA
LOC_Os12g16350
Os.47000.1.S1_x_at--1111--212Chr12:9356395..9356414 (20 bp)
ATATAGTGCTCATTTTTTCCGAAAT
LOC_Os12g16350
Os.47000.1.S1_x_at--1068--2191Chr10:22408318..22408441 (25 bp)
ACAAACCTCAGGTTTCACTTCTCAC
LOC_Os10g42220
Os.47000.1.S1_x_at--96--6151Chr10:22408276..22408300 (25 bp)
GAGGTGCCGGTGTTTCTATACATGG
LOC_Os10g42220
Os.47000.1.S1_x_at--45--8211Chr10:22408253..22408277 (25 bp)
GGAAGGTTCCGAGTTGTCACAGAGA
LOC_Os10g42220
Os.47000.1.S1_x_at--213--5951Chr10:22408059..22408254 (25 bp)
GAGCACGGTTTTTGCTATGCCAGAA
LOC_Os10g42220
Os.47000.1.S1_x_at--771--2151Chr10:22408034..22408058 (25 bp)
ACAGCATTGGGTCTCTTTCCAGATA
LOC_Os10g42220
Os.47000.1.S1_x_at--558--8431Chr10:22408005..22408029 (25 bp)
GGCCTCATATTTTCTATCTCGACTT
LOC_Os10g42220
Os.47000.1.S1_x_at--883--451NONE
ATCTCGACTTCCTGGGTTCTATGAG
NONE
Target Sequence 
GGCCAAAGCAGTTGAATGCCCTCTCCTCTGCAATGATAACNNGNTTTTTGAGGTGCTTCACTGCTTATGAGGAAGATGAA
GGAGTTAAACTATTGATTGTGAAGGGGAAAGGAAGAGCATTTTGTGCTGGTGGAGATGTTGCTGCAGTTGTCCGGTCTAT
AAATAATGATAGCTGGAAATATAGTGCTCATTTTTTCCGAAATGAATTTCTGTTGAACTATATCATTGCAACATATAACA
AACCTCAGGTTTCACTTCTCACTGGAATTGTCATGGGTGGAGGTGCCGGTGTTTCTATACATGGAAGGTTCCGAGTTGTC
ACAGAGAGCACGGTTTTTGCTATGCCAGAAACAGCATTGGGTCTCTTTCCAGATATTGGGGCCTCATATTTTCTATCTCG
ACTTCCTGGGTTCTATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47000.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis