Browse Element(s) Details


Os.7866.1.S1_at

Description gb:AK072743.1
DB_XREF= gi:32982766
TID=Os.7866.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative adenosine kinase (OSJNBa0003O19.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136M20, full insert sequence.
FL= gb:AK072743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4224011/11carbohydrate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42210Os.2764.1.S1_s_at11/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42210Os.2764.2.S1_x_at7/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42220Os.47000.1.S1_x_at10/1110+22407927..224104303-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42230Os.55585.1.S1_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42230Os.2750.2.S1_a_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42234NANA10+22417063..22417866NA
LOC_Os10g42240Os.7866.1.S1_at11/1110+22420567..22423416carbohydrate kinase, putative, expressed
LOC_Os10g42250Os.20189.1.S1_at10/1110+22424448..22426914expressed protein
LOC_Os10g42260OsAffx.20125.1.S1_at11/1110+22427620..22428470hypothetical protein
LOC_Os10g42270OsAffx.7899.1.S1_at10/1110+22429235..22431421hypothetical protein
LOC_Os10g42280Os.46585.1.S1_at11/1110+22436642..22437730Bet v I allergen family protein, putative, expressed
LOC_Os10g42299Os.2759.1.S1_s_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42299Os.12162.1.S1_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006169biological_processadenosine salvage
GO:0004001molecular_functionadenosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7866.1.S1_at--840--9631Chr10:22422831..22422855 (25 bp)
TCAGGGATTCTATATGGCATTCTTC
LOC_Os10g42240
Os.7866.1.S1_at--276--10751Chr10:22422870..22422894 (25 bp)
TTGAAGAGCATTGGCCTGCTCGCTT
LOC_Os10g42240
Os.7866.1.S1_at--84--9351Chr10:22422889..22422913 (25 bp)
TCGCTTCGCGAGTAGCTGCTATTGT
LOC_Os10g42240
Os.7866.1.S1_at--1155--9071Chr10:22422905..22422929 (25 bp)
TGCTATTGTCGTTGCGCAGCAAGGT
LOC_Os10g42240
Os.7866.1.S1_at--644--9931Chr10:22422937..22422961 (25 bp)
TACGGGTTCAGGACGCCGACAGATT
LOC_Os10g42240
Os.7866.1.S1_at--527--1251Chr10:22422957..22422981 (25 bp)
AGATTGGCCGAATCATTCACACTTC
LOC_Os10g42240
Os.7866.1.S1_at--448--131Chr10:22422971..22422995 (25 bp)
ATTCACACTTCACCTAGATAACCTG
LOC_Os10g42240
Os.7866.1.S1_at--911--4451Chr10:22423099..22423123 (25 bp)
GCCTAGCTAGCTCATTGTTCAGTAC
LOC_Os10g42240
Os.7866.1.S1_at--678--8791Chr10:22423114..22423138 (25 bp)
TGTTCAGTACAGCTGAGCTACCCAG
LOC_Os10g42240
Os.7866.1.S1_at--748--7111Chr10:22423142..22423166 (25 bp)
GTCAGTCCTTTCAGACGTTTGTTAC
LOC_Os10g42240
Os.7866.1.S1_at--197--10331Chr10:22423277..22423301 (25 bp)
TTTCATTGGTTCTTGTGTACACTCA
LOC_Os10g42240
Target Sequence 
TCAGGGATTCTATATGGCATTCTTCGGGGCTCTTCGGATTTGAAGAGCATTGGCCTGCTCGCTTCGCGAGTAGCTGCTAT
TGTCGTTGCGCAGCAAGGTACACGCNTACGGGTTCAGGACGCCGACAGATTGGCCGAATCATTCACACTTCACCTAGATA
ACCTGGAGTTTTGTTCAGATATTGAAACAGACCATGTTTCAAACTTCTGATCGTTTTAGCTGAAAGTNGTAGGACTTCCA
TTTGTATATAGCATCTGTTTNCTTTTAGGCCTAGCTAGCTCATTGTTCAGTACAGCTGAGCTACCCAGCTTGTCAGTCCT
TTCAGACGTTTGTTACAATTTCATTCCTTAAATTTGGTTCCAGAAAAGGATGCTACATACTTCATGGATTTCATATTGAA
CTGAAGATATTACTCCTAGATAAGGCAGTGGCAATAGTTCATGTGCTTTCATTGGTTCTTGTGTACACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis