Browse Element(s) Details


Os.46585.1.S1_at

Description gb:AK061525.1
DB_XREF= gi:32971543
TID=Os.46585.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0003O19.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C11, full insert sequence.
FL= gb:AK061525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4228011/11Bet v I allergen family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42230Os.55585.1.S1_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42230Os.2750.2.S1_a_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42234NANA10+22417063..22417866NA
LOC_Os10g42240Os.7866.1.S1_at11/1110+22420567..22423416carbohydrate kinase, putative, expressed
LOC_Os10g42250Os.20189.1.S1_at10/1110+22424448..22426914expressed protein
LOC_Os10g42260OsAffx.20125.1.S1_at11/1110+22427620..22428470hypothetical protein
LOC_Os10g42270OsAffx.7899.1.S1_at10/1110+22429235..22431421hypothetical protein
LOC_Os10g42280Os.46585.1.S1_at11/1110+22436642..22437730Bet v I allergen family protein, putative, expressed
LOC_Os10g42299Os.2759.1.S1_s_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42299Os.12162.1.S1_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42320Os.12732.2.S1_x_at11/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42320Os.12732.1.S1_a_at11/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42320Os.12732.1.S1_at10/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42340OsAffx.6945.1.S1_at11/1110+22459247..22463635expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46585.1.S1_at--788--4651Chr10:22437400..22437424 (25 bp)
GCGGCGGCGGAATAGCCTTTTTCTT
LOC_Os10g42280
Os.46585.1.S1_at--334--10351Chr10:22437428..22437452 (25 bp)
TTTTTGGACCTCTCTGCAATTTCAC
LOC_Os10g42280
Os.46585.1.S1_at--659--5191Chr10:22437443..22437467 (25 bp)
GCAATTTCACTTCTATTCAGGGAGG
LOC_Os10g42280
Os.46585.1.S1_at--735--10711Chr10:22437478..22437502 (25 bp)
TTGCTCCATGTCTCATGAAGTTGGA
LOC_Os10g42280
Os.46585.1.S1_at--777--1551Chr10:22437515..22437539 (25 bp)
AGCTTCTAATACATCTCATTCCTGG
LOC_Os10g42280
Os.46585.1.S1_at--29--10591Chr10:22437592..22437616 (25 bp)
TTCTCTTCCTGGATTTCTTTTGCTT
LOC_Os10g42280
Os.46585.1.S1_at--948--9031Chr10:22437612..22437636 (25 bp)
TGCTTGGAATTTTTACTTACCTTTG
LOC_Os10g42280
Os.46585.1.S1_at--311--9891Chr10:22437625..22437649 (25 bp)
TACTTACCTTTGTGTGTGTGTCTCA
LOC_Os10g42280
Os.46585.1.S1_at--1000--7471Chr10:22437640..22437664 (25 bp)
GTGTGTCTCACTTCCTGATTGGAAT
LOC_Os10g42280
Os.46585.1.S1_at--624--8511Chr10:22437659..22437683 (25 bp)
TGGAATCCATATTTGCTTTTCGGTG
LOC_Os10g42280
Os.46585.1.S1_at--575--9071Chr10:22437672..22437696 (25 bp)
TGCTTTTCGGTGGTTTTGTTCTTCA
LOC_Os10g42280
Target Sequence 
GCGGCGGCGGAATAGCCTTTTTCTTTTCTTTTTGGACCTCTCTGCAATTTCACTTCTATTCAGGGAGGTGCTTCGAATTT
GCTCCATGTCTCATGAAGTTGGAGGAGGAAGGGTCAGCTTCTAATACATCTCATTCCTGGNGGTGCTGCCTGTAATAATC
TCTTCATCTTCTTTTTTCCTCTCCTCCTCCTCTTCTCTTCCTGGATTTCTTTTGCTTGGAATTTTTACTTACCTTTGTGT
GTGTGTCTCACTTCCTGATTGGAATCCATATTTGCTTTTCGGTGGTTTTGTTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis