Browse Element(s) Details


Os.2750.2.S1_a_at

Description gb:AK102506.1
DB_XREF= gi:32987715
TID=Os.2750.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative AT-Hook DNA-binding protein (OSJNBa0003O19.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095F12, full insert sequence.
FL= gb:AK102506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4223011/11AT-hook protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42202NANA10+22384303..22389591hypothetical protein
LOC_Os10g42210Os.2764.1.S1_s_at11/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42210Os.2764.2.S1_x_at7/1110+22400553..224048513-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42220Os.47000.1.S1_x_at10/1110+22407927..224104303-hydroxyisobutyryl-coenzyme A hydrolase, putative
LOC_Os10g42230Os.55585.1.S1_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42230Os.2750.2.S1_a_at11/1110+22411948..22416151AT-hook protein 1, putative, expressed
LOC_Os10g42234NANA10+22417063..22417866NA
LOC_Os10g42240Os.7866.1.S1_at11/1110+22420567..22423416carbohydrate kinase, putative, expressed
LOC_Os10g42250Os.20189.1.S1_at10/1110+22424448..22426914expressed protein
LOC_Os10g42260OsAffx.20125.1.S1_at11/1110+22427620..22428470hypothetical protein
LOC_Os10g42270OsAffx.7899.1.S1_at10/1110+22429235..22431421hypothetical protein
LOC_Os10g42280Os.46585.1.S1_at11/1110+22436642..22437730Bet v I allergen family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2750.2.S1_a_at--99--3531Chr10:22412519..22412543 (25 bp)
CATCGGAGGGCACATCCAGTGGATC
LOC_Os10g42230
Os.2750.2.S1_a_at--868--1691Chr10:22412468..22412492 (25 bp)
ACCACAGCGGGATGCCGTACAACCA
LOC_Os10g42230
Os.2750.2.S1_a_at--108--3851Chr10:22412399..22412423 (25 bp)
CTGCTTACGCATCCGGTGGCTGGTC
LOC_Os10g42230
Os.2750.2.S1_a_at--510--1431Chr10:22412357..22412381 (25 bp)
AGAACAGGCACGACTCTGACATGAA
LOC_Os10g42230
Os.2750.2.S1_a_at--655--6271Chr10:22412329..22412353 (25 bp)
GATGTCGAACTAACACTCTGCTCGG
LOC_Os10g42230
Os.2750.2.S1_a_at--536--4031Chr10:22412301..22412325 (25 bp)
CGAGGCGCCCCATTTGTTTGGTTGG
LOC_Os10g42230
Os.2750.2.S1_a_at--1066--10091Chr10:22412138..22412162 (25 bp)
TAGGCGCTGTTGTAACGCTGTAGCT
LOC_Os10g42230
Os.2750.2.S1_a_at--810--10791Chr10:22412072..22412096 (25 bp)
TTGTACTACCGGTGGATATGCCTTC
LOC_Os10g42230
Os.2750.2.S1_a_at--600--3611Chr10:22412045..22412069 (25 bp)
CTTGTCTGTCTTGCTGAGATCTTCA
LOC_Os10g42230
Os.2750.2.S1_a_at--249--1271Chr10:22412029..22412053 (25 bp)
AGATCTTCACCTCCTTAGTAGGCTA
LOC_Os10g42230
Os.2750.2.S1_a_at--736--5211Chr10:22411978..22412002 (25 bp)
GAATTTACCTGAATGCTTTGATTTC
LOC_Os10g42230
Target Sequence 
CATCGGAGGGCACATCCAGTGGATCNTCCGATGACTCGGNCAGCCCGATCANACCACAGCGGGATGCCGTACAACCACTC
CGGGCAGCAGCAGCAACACCAGCAGCACCAGCACATGCCCCCTGCTTACGCATCCGGTGGCTGGTCGCTCTCAGCTCATC
ATCAGAACAGGCACGACTCTGACATGAAGATGATGTCGAACTAACACTCTGCTCGGCCTCGAGGCGCCCCATTTGTTTGG
TTGGGCTGAAGAAGGAGCTGATGATGGATGGTGGATCGTGTTCNTACCCCCCTCTGCTAGCTAAGAGATTTAGGANCATG
GTGATGAATGATCTCAGAGAGATGTGTTGTTGCTGTTGTTTTTCCTTGGAGTAAGATTAATTTAGGCGCTGTTGTAACGC
TGTAGCTGTCATAATTAAGCCNCCTCTAACGCAAGAGTTTATTATGTGTTGTACTACCGGTGGATATGCCTTCNGCTTGT
CTGTCTTGCTGAGATCTTCACCTCCTTAGTAGGCTAGTAGTAGTCTACATACAGACTTGTATGAATTTACCTGAATGCTT
TGATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2750.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis