Browse Element(s) Details


Os.4114.1.S1_at

Description gb:AK072719.1
DB_XREF= gi:32982742
TID=Os.4114.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0003O19.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138B10, full insert sequence.
FL= gb:AK107534.1 gb:AK072719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4242011/11GTPase activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42390Os.50990.1.S1_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42390OsAffx.18608.1.S1_x_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42400OsAffx.30753.1.S1_at11/1110+22490090..22494225hypothetical protein
LOC_Os10g42400Os.38109.1.S1_at2/1110+22490090..22494225hypothetical protein
LOC_Os10g42404NANA10+22495316..22495540hypothetical protein
LOC_Os10g42410Os.7002.1.S1_at11/1110+22499662..22501684expressed protein
LOC_Os10g42420Os.4114.1.S1_at11/1110+22506996..22511053GTPase activating protein, putative, expressed
LOC_Os10g42430Os.46443.1.S1_at11/1110+22527589..22530117transcription factor MYC7E, putative, expressed
LOC_Os10g42439Os.2769.1.S2_at11/1110+22531704..22546265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os10g42439Os.2769.1.S1_at10/1110+22531704..22546265DNAJ heat shock N-terminal domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4114.1.S1_at--910--2311Chr10:22507604..22507922 (25 bp)
AAAGTTTTCGGGATCTTCTGCCATT
LOC_Os10g42420
Os.4114.1.S1_at--988--7811Chr10:22507561..22507585 (25 bp)
GGTCATCCAACCAATAGTTCCAACG
LOC_Os10g42420
Os.4114.1.S1_at--601--10691Chr10:22507544..22507568 (25 bp)
TTCCAACGTGGATCTGAGTGCTTCA
LOC_Os10g42420
Os.4114.1.S1_at--923--1251Chr10:22507520..22507544 (25 bp)
AGATTTGATCAACCGGCTTTCTTTC
LOC_Os10g42420
Os.4114.1.S1_at--842--10631Chr10:22507418..22507442 (25 bp)
TTCCCAGGATCTGTCTTCTATCAAG
LOC_Os10g42420
Os.4114.1.S1_at--232--2771Chr10:22507329..22507353 (25 bp)
AAGACCGGATCCTGTGAGTTCAATC
LOC_Os10g42420
Os.4114.1.S1_at--1130--9851Chr10:22507304..22507328 (25 bp)
TACAGTCGAGACTCCGTGACATTTC
LOC_Os10g42420
Os.4114.1.S1_at--656--7351Chr10:22507289..22507313 (25 bp)
GTGACATTTCTTCAGCCGTTACAGG
LOC_Os10g42420
Os.4114.1.S1_at--77--4031Chr10:22507273..22507297 (25 bp)
CGTTACAGGATTCGCCGTGACAATA
LOC_Os10g42420
Os.4114.1.S1_at--150--2831Chr10:22507249..22507273 (25 bp)
AAGTTGACGGCATGCCTGCTTGGCA
LOC_Os10g42420
Os.4114.1.S1_at--798--9391Chr10:22507046..22507070 (25 bp)
TCGTTGCGTTGTAATGACCGTTTCA
LOC_Os10g42420
Target Sequence 
AAAGTTTTCGGGATCTTCTGCCATTTCAAGTGCTGATCTATTTGGTCATCCAACCAATAGTTCCAACGTGGATCTGAGTG
CTTCAGATTTGATCAACCGGCTTTCTTTCCAGGCTTCCCAGGATCTGTCTTCTATCAAGAACATGGCTGGGGAAACTGGG
AAGAAGTTGACATCTTTGGCATCGAACATCATGTCTGATCTTCAAGACCGGATCCTGTGAGTTCAATCTACAGTCGAGAC
TCCGTGACATTTCTTCAGCCGTTACAGGATTCGCCGTGACAATAAGTTGACGGCATGCCTGCTTGGCAGATATGTTCAGG
AGTTCCTATAACTTAAAACTTAAAGACCTGGAGCTATAGAGAAAATGTTATGTCGTGAATGCTGTACTGGCTAAAGTCAT
GTAAGCATATGCACCTGTAACAAGAATGTTTTTTTCATAAAATTGTTAAAACCGTCTTAGTGGGATCTTAGATGCTACCT
AAAAGTGTCGTTGCGTTGTAATGACCGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis