Browse Element(s) Details


Os.7002.1.S1_at

Description gb:CB630449
DB_XREF= gi:29625438
DB_XREF=OSIIEb07G12.r
CLONE=OSIIEb07G12
TID=Os.7002.1
CNT=13
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.7002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0003O19.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4241011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42364OsAffx.22848.4.S1_x_at3/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42364OsAffx.22848.4.S1_at2/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42390Os.50990.1.S1_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42390OsAffx.18608.1.S1_x_at11/1110+22488380..22489343Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g42400OsAffx.30753.1.S1_at11/1110+22490090..22494225hypothetical protein
LOC_Os10g42400Os.38109.1.S1_at2/1110+22490090..22494225hypothetical protein
LOC_Os10g42404NANA10+22495316..22495540hypothetical protein
LOC_Os10g42410Os.7002.1.S1_at11/1110+22499662..22501684expressed protein
LOC_Os10g42420Os.4114.1.S1_at11/1110+22506996..22511053GTPase activating protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7002.1.S1_at--801--1171Chr10:22500173..22500197 (25 bp)
AGTACTAGCCATTGCCAACCAACAG
LOC_Os10g42410
Os.7002.1.S1_at--143--10531Chr10:22500144..22500168 (25 bp)
TTCACCTGCAGGAATCCAGCGCGTG
LOC_Os10g42410
Os.7002.1.S1_at--399--3391Chr10:22500128..22500152 (25 bp)
CAGCGCGTGCGCAATTGGGAATCGC
LOC_Os10g42410
Os.7002.1.S1_at--1008--5251Chr10:22500110..22500134 (25 bp)
GAATCGCATTGCAAAGCGGCCGCCA
LOC_Os10g42410
Os.7002.1.S1_at--181--10711Chr10:22500073..22500097 (25 bp)
TTGCCCATTGCCATTACCATTGTTG
LOC_Os10g42410
Os.7002.1.S1_at--944--1731Chr10:22500058..22500082 (25 bp)
ACCATTGTTGCCTTTTGGTGGTGCT
LOC_Os10g42410
Os.7002.1.S1_at--379--2352Chr11:15719131..15719218 (24 bp)
AAAGCACTAGCTTTTCCATTGCTAA
NONE
Os.7002.1.S1_at--315--4311Chr10:22499952..22499976 (25 bp)
CCATTGCTAATTGCTCCATTACCAT
LOC_Os10g42410
Os.7002.1.S1_at--1139--9511Chr10:22499858..22499882 (25 bp)
TCTCTCTTGTGTTCAACCTTCTATA
LOC_Os10g42410
Os.7002.1.S1_at--957--5031Chr10:22499783..22499807 (25 bp)
GCAGACTTGTAGCTAATACTCCTAG
LOC_Os10g42410
Os.7002.1.S1_at--149--9071Chr10:22499724..22499748 (25 bp)
TGCTTAAGTTTTGTGATGGCTGCTA
LOC_Os10g42410
Target Sequence 
AGTACTAGCCATTGCCAACCAACAGCAACTTCACCTGCAGGAATCCAGCGCGTGCGCAATTGGGAATCGCATTGCAAAGC
GGCCGCCACCTNGTCGGCCTTTGCCCATTGCCATTACCATTGTTGCCTTTTGGTGGTGCTTCTCGAGGTGGATGCCATTA
GCTTTGCNCAAAGGAAAGGAGGAAGATGAAGAAAAGGAAGGGTACAAAAGCACTAGCTTTTCCATTGCTAATTGCTCCAT
TACCATTACTAGGAACNCATTAAAAATACAGACAGGATATGTATACATCTTTAATTAGTGACCNCCCCCTCCCTCTCTCT
CTTGTGTTCAACCTTCTATATAGTCTTTTTTTTTTCATTTTGAGATGTTTCAAATTTTAGATGTCTTTGAGCAGACTTGT
AGCTAATACTCCTAGTGGATTAGCAGTGATGATAATAAGTAGCTGGTGGTGCTTAAGTTTTGTGATGGCTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis