Browse Element(s) Details


Os.46443.1.S1_at

Description gb:AY536428.1
DB_XREF= gi:45477840
TID=Os.46443.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46443 (NCBI UniGene Cluster)
DEF=Oryza sativa MYC protein mRNA, complete cds.
PROD=MYC protein
FL= gb:AY536428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4243011/11transcription factor MYC7E, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42420Os.4114.1.S1_at11/1110+22506996..22511053GTPase activating protein, putative, expressed
LOC_Os10g42430Os.46443.1.S1_at11/1110+22527589..22530117transcription factor MYC7E, putative, expressed
LOC_Os10g42439Os.2769.1.S2_at11/1110+22531704..22546265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os10g42439Os.2769.1.S1_at10/1110+22531704..22546265DNAJ heat shock N-terminal domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009611biological_processresponse to wounding
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46443.1.S1_at--959--1751Chr10:22529537..22529561 (25 bp)
ACCTGGACGTGTACCATGCCAGCGT
LOC_Os10g42430
Os.46443.1.S1_at--865--8751Chr10:22529546..22529570 (25 bp)
TGTACCATGCCAGCGTCTCCGTGGT
LOC_Os10g42430
Os.46443.1.S1_at--1115--9611Chr10:22529579..22529603 (25 bp)
TCATGATCCAGCAGGTGGCCGTCAA
LOC_Os10g42430
Os.46443.1.S1_at--279--7091Chr10:22529599..22529623 (25 bp)
GTCAAGATGGCCAGCCGCGTCTACT
LOC_Os10g42430
Os.46443.1.S1_at--573--4531Chr10:22529680..22529704 (25 bp)
GCCCGGTAACTCAACTCTAGCGAGG
LOC_Os10g42430
Os.46443.1.S1_at--260--9531Chr10:22529695..22529719 (25 bp)
TCTAGCGAGGAAACCCAATCGATAT
LOC_Os10g42430
Os.46443.1.S1_at--723--4411Chr10:22529753..22529777 (25 bp)
GCCAGAGCTTCAGGAATGCCAAGAA
LOC_Os10g42430
Os.46443.1.S1_at--342--5791Chr10:22529778..22529802 (25 bp)
GACGACGAGACGATGATCAAATCAT
LOC_Os10g42430
Os.46443.1.S1_at--896--9111Chr10:22529903..22529927 (25 bp)
TGCTGATCGTCGTCTTGTTTTTGAT
LOC_Os10g42430
Os.46443.1.S1_at--66--3631Chr10:22529916..22529940 (25 bp)
CTTGTTTTTGATACTGATAGCAGCG
LOC_Os10g42430
Os.46443.1.S1_at--603--8011Chr10:22529988..22530012 (25 bp)
GGAGGAAAGAAATCATCGGCGATAT
LOC_Os10g42430
Target Sequence 
ACCTGGACGTGTACCATGCCAGCGTCTCCGTGGTCAAGGACCTCATGATCCAGCAGGTGGCCGTCAAGATGGCCAGCCGC
GTCTACTCGCAGGACCAGCTCAACGCCGCGCTCTACACCCGCATCGCCGAGCCTGGCACCGCCGCCCGGTAACTCAACTC
TAGCGAGGAAACCCAATCGATATACTCTCTACTCTCCCCAAGCCGGCGTAGCCNTGGCCAGAGCTTCAGGAATGCCAAGA
AGACGACGAGACGATGATCAAATCATGTTGTTGTTGTTGTAAAATTAAGTTTAAAGATCTGTGTTAGGATGGATGGATGG
ATGGATGGAGAGGATGATTGATATCAACTCNCNNCTCAAGCTGAAGCTGCTGCTGCTGATCGTCGTCTTGTTTTTGATAC
TGATAGCAGCGGNTGGTATTTCNTTTCTTCCTTTCTTTGTTAGCAGGAANGAAGGAAGGGAGGAAAGAAATCATCGGCGA
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis