Browse Element(s) Details


OsAffx.15861.1.S1_at

Description tigr:9634.m03888
TID=OsAffx.15861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polyphosphoinositide binding protein Ssh1p
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g405109/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40480NANA6+24113441..24119596retrotransposon protein, putative, unclassified
LOC_Os06g40490Os.50415.1.S1_at11/116+24126170..24129371Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g40500Os.53183.1.S1_at11/116+24138353..24141393phosphatidic acid phosphatase, putative, expressed
LOC_Os06g40500Os.6102.1.S1_s_at11/116+24138353..24141393phosphatidic acid phosphatase, putative, expressed
LOC_Os06g40510OsAffx.15861.1.S1_at9/116+24141509..24146314CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g40510Os.38109.1.S1_at2/116+24141509..24146314CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g40520Os.39427.1.A1_s_at11/116+24149158..24153305expressed protein
LOC_Os06g40520Os.39427.1.A1_at11/116+24149158..24153305expressed protein
LOC_Os06g40520OsAffx.28025.4.S1_x_at1/116+24149158..24153305expressed protein
LOC_Os06g40530NANA6+24156238..24160020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40540Os.40360.1.S1_x_at1/116+24164118..24166511hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15861.1.S1_at--803--8331Chr06:24142772..24142796 (25 bp)
GGCGGCCTATTAGCACCTGTATAAA
LOC_Os06g40510
OsAffx.15861.1.S1_at--740--6651Chr06:24142558..24142582 (25 bp)
GTTGACGATCTGAATTACCCTGAAA
LOC_Os06g40510
OsAffx.15861.1.S1_at--1066--9091Chr06:24142508..24142532 (25 bp)
TGCTCCATATATATTCTCGGCATGT
LOC_Os06g40510
OsAffx.15861.1.S1_at--807--9831Chr06:24142091..24142112 (22 bp)
TAAAGATTATGGACCACTCCTCCCT
LOC_Os06g40510
OsAffx.15861.1.S1_at--423--4671Chr06:24142051..24142075 (25 bp)
GCGGGAAGGCTCAGGATCATCTAAA
LOC_Os06g40510
OsAffx.15861.1.S1_at--670--2591Chr06:24142017..24142041 (25 bp)
AACGACGTCAACAATTGCTTCTCTC
LOC_Os06g40510
OsAffx.15861.1.S1_at--498--1371Chr06:24141973..24141997 (25 bp)
AGAGCTCTACCACTACATTGACGAG
LOC_Os06g40510
OsAffx.15861.1.S1_at--945--4991Chr06:24141949..24141973 (25 bp)
GCAGGCATTGAACCAGGAGCTCATC
LOC_Os06g40510
OsAffx.15861.1.S1_at--18--1091NONE
AGGGCTTCCCTGCATGTGAATATCC
NONE
OsAffx.15861.1.S1_at--191--3111NONE
AATATCCCCTGACCAAGATCCTGAG
NONE
OsAffx.15861.1.S1_at--32--6151Chr06:24141864..24141888 (25 bp)
GAGGTCATCGAAGCCGAGTTCCATA
LOC_Os06g40510
Target Sequence 
GGCGGCCTATTAGCACCTGTATAAAGGTTCTAGATATGACTGGATTGAAATTGTCAGCACTCAACCAAATGAAGATTTTG
ACTGCAATATCTACTGTTGACGATCTGAATTACCCTGAAAAGGCAGAGACCTATTATATAGTTAATGCTCCATATATATT
CTCGGCATGTTGGAAGGTTGTGAAGCCTCTCTTGCAAGAGAGGACACGGAAGAAGGTTCACGTTTTGCATGGTTGTGGGA
GAGATGAGCTTCTAAAGATTATGGACCACTCCTCCCTTCCCCATTTCTGTCAGCGGGAAGGCTCAGGATCATCTAAAAAT
TCGTCGAACGACGTCAACAATTGCTTCTCTCTCGATCATCCTTTCCACCAAGAGCTCTACCACTACATTGACGAGCAGGC
ATTGAACCAGGAGCTCATCAAGCAGGGCTTCCCTGCATGTGAATATCCCCTGACCAAGATCCTGAGGATGCCAAGATCGT
CGAGGTCATCGAAGCCGAGTTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis