Browse Element(s) Details


Os.53183.1.S1_at

Description gb:AK071250.1
DB_XREF= gi:32981273
TID=Os.53183.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088G11, full insert sequence.
FL= gb:AK071250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4050011/11phosphatidic acid phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40480NANA6+24113441..24119596retrotransposon protein, putative, unclassified
LOC_Os06g40490Os.50415.1.S1_at11/116+24126170..24129371Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g40500Os.53183.1.S1_at11/116+24138353..24141393phosphatidic acid phosphatase, putative, expressed
LOC_Os06g40500Os.6102.1.S1_s_at11/116+24138353..24141393phosphatidic acid phosphatase, putative, expressed
LOC_Os06g40510OsAffx.15861.1.S1_at9/116+24141509..24146314CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g40510Os.38109.1.S1_at2/116+24141509..24146314CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g40520Os.39427.1.A1_s_at11/116+24149158..24153305expressed protein
LOC_Os06g40520Os.39427.1.A1_at11/116+24149158..24153305expressed protein
LOC_Os06g40520OsAffx.28025.4.S1_x_at1/116+24149158..24153305expressed protein
LOC_Os06g40530NANA6+24156238..24160020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40540Os.40360.1.S1_x_at1/116+24164118..24166511hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53183.1.S1_at--20--8391Chr06:24140816..24140840 (25 bp)
GGCGATGATGATGTTCACCTGCCGC
LOC_Os06g40500
Os.53183.1.S1_at--321--4631Chr06:24140817..24140841 (25 bp)
GCGATGATGATGTTCACCTGCCGCG
LOC_Os06g40500
Os.53183.1.S1_at--930--4051Chr06:24140818..24140842 (25 bp)
CGATGATGATGTTCACCTGCCGCGG
LOC_Os06g40500
Os.53183.1.S1_at--1114--6291Chr06:24140819..24140843 (25 bp)
GATGATGATGTTCACCTGCCGCGGC
LOC_Os06g40500
Os.53183.1.S1_at--571--711Chr06:24140820..24140844 (25 bp)
ATGATGATGTTCACCTGCCGCGGCG
LOC_Os06g40500
Os.53183.1.S1_at--238--8871Chr06:24140821..24140845 (25 bp)
TGATGATGTTCACCTGCCGCGGCGC
LOC_Os06g40500
Os.53183.1.S1_at--594--711Chr06:24140823..24140847 (25 bp)
ATGATGTTCACCTGCCGCGGCGCGC
LOC_Os06g40500
Os.53183.1.S1_at--143--3931Chr06:24140875..24140899 (25 bp)
CGGCCGAGTTCCTGGGCTCCGGCAT
LOC_Os06g40500
Os.53183.1.S1_at--150--6051Chr06:24140880..24140904 (25 bp)
GAGTTCCTGGGCTCCGGCATGGACT
LOC_Os06g40500
Os.53183.1.S1_at--579--1231Chr06:24140881..24140905 (25 bp)
AGTTCCTGGGCTCCGGCATGGACTT
LOC_Os06g40500
Os.53183.1.S1_at--11--6711Chr06:24140882..24140906 (25 bp)
GTTCCTGGGCTCCGGCATGGACTTC
LOC_Os06g40500
Target Sequence 
GGCGATGATGATGTTCACCTGCCGCGGCGCGCTCGGCTGCGCCACGCAGCTGCCGCTGCCGGCCGAGTTCCTGGGCTCCG
GCATGGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis