Browse Element(s) Details


Os.11307.1.S1_at

Description gb:CB627040
DB_XREF= gi:29622029
DB_XREF=OSIIEb01L09.r
CLONE=OSIIEb01L09
TID=Os.11307.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.11307 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T05080 (A.thaliana) T05080 hypothetical protein T6K21.120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4044011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40410Os.46306.1.S1_x_at8/116+24060015..24066602transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40420OsAffx.28023.2.S1_at11/116+24075180..24076128hypothetical protein
LOC_Os06g40420OsAffx.28023.2.S1_s_at11/116+24075180..24076128hypothetical protein
LOC_Os06g40420OsAffx.28023.1.S1_at2/116+24075180..24076128hypothetical protein
LOC_Os06g40430OsAffx.28024.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40430OsAffx.5068.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40440Os.11307.1.S1_at11/116+24088906..24090220expressed protein
LOC_Os06g40440OsAffx.4053.1.S1_at1/116+24088906..24090220expressed protein
LOC_Os06g40450Os.49516.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_s_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40460Os.52578.1.S1_x_at11/116+24101989..24107136expressed protein
LOC_Os06g40460OsAffx.15860.1.S1_at11/116+24101989..24107136expressed protein
LOC_Os06g40470NANA6+24109519..24112810retrotransposon protein, putative, unclassified
LOC_Os06g40480NANA6+24113441..24119596retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11307.1.S1_at--349--1631Chr06:24089865..24089889 (25 bp)
AGCGGCGTCTTGAGTGAACAGATGC
LOC_Os06g40440
Os.11307.1.S1_at--939--8971Chr06:24089879..24089903 (25 bp)
TGAACAGATGCTCTTGATCTCTCGC
LOC_Os06g40440
Os.11307.1.S1_at--820--451Chr06:24089895..24089919 (25 bp)
ATCTCTCGCCGCCTGTAAAGAAGAC
LOC_Os06g40440
Os.11307.1.S1_at--663--5791Chr06:24089917..24089941 (25 bp)
GACGAAGCAACGAACACCCGAGGAG
LOC_Os06g40440
Os.11307.1.S1_at--216--1811Chr06:24089932..24089956 (25 bp)
ACCCGAGGAGGAATCACGGCGGCCT
LOC_Os06g40440
Os.11307.1.S1_at--172--4731Chr06:24090029..24090053 (25 bp)
GCTGAATCCGGCCACCTGTAAAAAT
LOC_Os06g40440
Os.11307.1.S1_at--394--5971Chr06:24090061..24090085 (25 bp)
GAGAAGAGCACCACGCAGCTAAGGT
LOC_Os06g40440
Os.11307.1.S1_at--797--5051Chr06:24090075..24090099 (25 bp)
GCAGCTAAGGTGTAGTCGATCTTGT
LOC_Os06g40440
Os.11307.1.S1_at--666--6291Chr06:24090124..24090148 (25 bp)
GATGATCTTGTTTACTTCTTGTACA
LOC_Os06g40440
Os.11307.1.S1_at--741--2051Chr06:24090137..24090161 (25 bp)
ACTTCTTGTACATGTGTATCACTGT
LOC_Os06g40440
Os.11307.1.S1_at--844--6891Chr06:24090152..24090176 (25 bp)
GTATCACTGTATCAGCAACGCTTGT
LOC_Os06g40440
Target Sequence 
AGCGGCGTCTTGAGTGAACAGATGCTCTTGATCTCTCGCCGCCTGTAAAGAAGACGAAGCAACGAACACCCGAGGAGGAA
TCACGGCGGCCTCTCTCCGGCGAGGCANCGGCCGTCGTCGACGTCGCCGGCTNGNCCGGCCCNGNGACCCTNGNCNNNGC
TCGCAGCTGAATCCGGCCACCTGTAAAAATGAATCTGGAGAAGAGCACCACGCAGCTAAGGTGTAGTCGATCTTGTAAAA
TGAGNNTGCAAAGCCTACATGATGATCTTGTTTACTTCTTGTACATGTGTATCACTGTATCAGCAACGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis