Browse Element(s) Details


OsAffx.28023.1.S1_at

Description tigr:9629.m00502
TID=OsAffx.28023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0577010/11expressed protein
LOC_Os06g404202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28023.1.S1_at--795--4251Chr01:2751798..2751822 (25 bp)
CCGGCAACAACGACGCCTGTGGGTG
LOC_Os01g05770
OsAffx.28023.1.S1_at--644--8632Chr01:2751815..2751839 (25 bp)
TGTGGGTGCCGTTTTTTCCTCTTGG
LOC_Os01g05770
OsAffx.28023.1.S1_at--334--10374Chr09:20996258..20996282 (25 bp)
TTTTCTTGTCTCTCCCAATTACTTT
NONE
OsAffx.28023.1.S1_at--1018--4371NONE
CCAATTACTTTCTTCAGGGACTAGT
NONE
OsAffx.28023.1.S1_at--882--2531Chr01:2753650..2753674 (25 bp)
AACTCAGTCACCGATGTTGATGCGG
LOC_Os01g05770
OsAffx.28023.1.S1_at--631--731Chr01:2753663..2753687 (25 bp)
ATGTTGATGCGGTGGCCTCTTCTGT
LOC_Os01g05770
OsAffx.28023.1.S1_at--834--1271Chr01:2753701..2753725 (25 bp)
AGATCACAACCGTCTTCTGATTCGC
LOC_Os01g05770
OsAffx.28023.1.S1_at--420--8831Chr01:2753718..2753742 (25 bp)
TGATTCGCTTCAAAGCCCCTGCAAA
LOC_Os01g05770
OsAffx.28023.1.S1_at--1110--2331Chr01:2753740..2753764 (25 bp)
AAAGCTAGCCCCTGTCGAGATGCTT
LOC_Os01g05770
OsAffx.28023.1.S1_at--1028--631Chr01:2753759..2753783 (25 bp)
ATGCTTCTTTTGAGCTGTGCTGGCA
LOC_Os01g05770
OsAffx.28023.1.S1_at--950--551Chr01:2753802..2753826 (25 bp)
ATCCGGTGCACATGTTCCGATGTGG
LOC_Os01g05770
Target Sequence 
CCGGCAACAACGACGCCTGTGGGTGCCGTTTTTTCCTCTTGGGGTGTTGCCGCTTTTCTTGTCTCTCCCAATTACTTTCT
TCAGGGACTAGTTTAGTCCCTGATCCAAACACCACCAAAATCCTTGTCTCTTCCCTCAACTCAGTCACCGATGTTGATGC
GGTGGCCTCTTCTGTGGGGCCCCTGTTCAGATCACAACCGTCTTCTGATTCGCTTCAAAGCCCCTGCAAAGCTAGCCCCT
GTCGAGATGCTTCTTTTGAGCTGTGCTGGCAGGCGGAGCATGTGCCCCCATCCGGTGCACATGTTCCGATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis